TkA08G110480 | RubberDandelionOmics

Gene overview

TkA08G110480

Reference: TK1151 Chr: Chr08 Coordinates: 28740798-28745354 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1293 bp · TkA08G110480|TK1151|cDNA

CATGAAGGTTTGCAAAGGTTTGCAAAGGAAGTTGATGCAATTGTGGCAAAATGCCTCACTGGAGGGCCAAAATCAGTGGAGAAGGCACAGATTGTCTTCATGCTTTGGGTGGAGTTGGAGGCTGTGGATGCATTTCTGGATGCTATGGATAAAGCAATAAAAGCCAAAGTTGCTAAAGCTGTTGTTCCTGCCATAGATGTCCTGTTTCAAGCCTTGAGGGTTAACACTTTGAGCTTTGTCGTTGGATTGGTAAAGATGCT...

CDS

Download CDS FASTA

1293 bp · TkA08G110480|TK1151|CDS

CATGAAGGTTTGCAAAGGTTTGCAAAGGAAGTTGATGCAATTGTGGCAAAATGCCTCACTGGAGGGCCAAAATCAGTGGAGAAGGCACAGATTGTCTTCATGCTTTGGGTGGAGTTGGAGGCTGTGGATGCATTTCTGGATGCTATGGATAAAGCAATAAAAGCCAAAGTTGCTAAAGCTGTTGTTCCTGCCATAGATGTCCTGTTTCAAGCCTTGAGGGTTAACACTTTGAGCTTTGTCGTTGGATTGGTAAAGATGCT...

Protein

Download Protein FASTA

430 aa · TkA08G110480|TK1151|PROTEIN

HEGLQRFAKEVDAIVAKCLTGGPKSVEKAQIVFMLWVELEAVDAFLDAMDKAIKAKVAKAVVPAIDVLFQALRVNTLSFVVGLVKMLLNPYCLKKTRDTMEVATEAAGSGPSEESTAEVSNEIDEYKLVDPVDILTPLKKTVFWNGVKATKWSERRDVAELTKLASTKRIAPGDISEECHTLKKLIIDSSVAVAVEAVQVLGNLAAGLRTNLSASSRFLLPYFFYKLKEKNPTMTVAHTNTLQAMHKAGSLTLADIVEGM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G110480`
TK1151 ID	TkA08G110480
OH-1004 ID	LXL04_031500
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	85.500
Protein coverage (%)	TK1151 99.302 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G110480

Location Chr08:28740798-28745354 (-)

Description Similar to MOR1: Protein MOR1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g35630`	Microtubule-binding protein that is essential for cortical microtubules organization and function.	MOR1 is essential for organizing cortical microtubules in plants.2001 · DOI: 10.1038/35079128 Mutation or drug-dependent microtubule disruption causes radial swelling without altering parallel cellulose microfibril deposition in Arabidopsis root cells.2003 · DOI: 10.1105/tpc.011593 Genetic analysis of adventitious root formation with a novel series of temperature-sensitive mutants of Arabidopsis thaliana.2003 · DOI: 10.1242/dev.00794 Cellulose microfibril alignment recovers from DCB-induced disruption despite microtubule disorganization.2003 · DOI: 10.1046/j.1365-313x.2003.01906.x Aberrant cell plate formation in the Arabidopsis thaliana microtubule organization 1 mutant.2005 · DOI: 10.1093/pcp/pci068 MICROTUBULE ORGANIZATION 1 regulates structure and function of microtubule arrays during mitosis and cytokinesis in the Arabidopsis root.2006 · DOI: 10.1104/pp.105.069989 Hypersensitivity to cytoskeletal antagonists demonstrates microtubule-microfilament cross-talk in the control of root elongation in Arabidopsis thaliana.2006 · DOI: 10.1111/j.1469-8137.2006.01671.x MOR1, the Arabidopsis thaliana homologue of Xenopus MAP215, promotes rapid growth and shrinkage, and suppresses the pausing of microtubules in vivo.2008 · DOI: 10.1242/jcs.039065

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0816400`	Microtubule-associated protein that is essential for cortical microtubules organization and function.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031500 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000226 microtubule cytoskeleton organization Biological Process

GO:0000281 mitotic cytokinesis Biological Process

GO:0000911 cytokinesis by cell plate formation Biological Process

GO:0007030 Golgi organization Biological Process

GO:0007052 mitotic spindle organization Biological Process

GO:0009920 cell plate formation involved in plant-type cell wall biogenesis Biological Process

GO:0030951 establishment or maintenance of microtubule cytoskeleton polarity Biological Process

GO:0046785 microtubule polymerization Biological Process

GO:0051298 centrosome duplication Biological Process

GO:0000776 kinetochore Cellular Component

GO:0000922 spindle pole Cellular Component

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT2G35630

ddi:DDB_G0268616

dosa:Os01g0816400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.586

Rank 1 · TkA08G110480 · TK1151

Nucleus0.310

Rank 2 · TkA08G110480 · TK1151

Mitochondrion0.087

Rank 3 · TkA08G110480 · TK1151

Endoplasmic reticulum0.085

Rank 4 · TkA08G110480 · TK1151

Cell membrane0.079

Rank 5 · TkA08G110480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21041XMAP215_CLASP_TOG9-73 aa

PF21041XMAP215_CLASP_TOG175-206 aa

PF02985HEAT182-207 aa

PF26752MIP2_C212-274 aa

PF02985HEAT291-314 aa

PF21041XMAP215_CLASP_TOG299-328 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G110480	`PF21041`	XMAP215_CLASP_TOG	9	73	1.9e-06	28.5
TkA08G110480	`PF21041`	XMAP215_CLASP_TOG	175	206	1.9e-06	28.5
TkA08G110480	`PF02985`	HEAT	182	207	0.00082	20.1
TkA08G110480	`PF26752`	MIP2_C	212	274	0.022	14.2
TkA08G110480	`PF02985`	HEAT	291	314	0.00082	20.1
TkA08G110480	`PF21041`	XMAP215_CLASP_TOG	299	328	1.9e-06	28.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94FN2`	Arabidopsis thaliana	sp\|Q94FN2\|MOR1_ARATH Protein MOR1	50.600%	Swiss-Prot	High
`Q5N749`	Oryza sativa subsp. japonica	sp\|Q5N749\|MOR1_ORYSJ Protein MOR1	52.300%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card