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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G106100
Reference: TK1151 Chr: Chr08 Coordinates: 27653491-27658145 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4009 bp · TkA08G106100|TK1151|cDNA

TGGTAGTCATCTGATCCAACGGTTAGGATGCAATAGAAAGAATCGGAATAAGAGCGCCTGAGATTCGGAGGCTTCCACGCAAGCAGTAGATTGCTTCGAGGCTCGTCGGCGGAGAAACCTAAATACCCATAGTCTCCGAGGACTCTCACCAAACACTCTCCTTCTTACACCTACTATATAACCCCAATTCTTCCTCGCCGTTACGTATATTTCTCTATTTCTCTCATCGAGCTCCAGAGCTGGTTCAAATACAGACAGGT...

CDS

Download CDS FASTA

1971 bp · TkA08G106100|TK1151|CDS

ATGGATCATATGCCTACAGGAACCATCGTCTTCACCACCATCGGCCAACCTCACTACGGCTTCGATGTTTTCTCCACTCCACTACCTCTTGATCTCCATGAATTTTCCTCATCTCCTCCCTCAGAACACCGCCTCACCGACGGTGTTTCCGTCAATTTCAATGCTCAGTTCATCGGCCCTGACGATAGCCTCCAACCCCTTGTTTATATTTCCGAGAGAAATGGATTATCCCAAATTTTTCTAGATTCAGAACCCTTACC...

Protein

Download Protein FASTA

656 aa · TkA08G106100|TK1151|PROTEIN

MDHMPTGTIVFTTIGQPHYGFDVFSTPLPLDLHEFSSSPPSEHRLTDGVSVNFNAQFIGPDDSLQPLVYISERNGLSQIFLDSEPLPSVPKSLFHDRPIVRDGRLYFISAHEPSNAPFKSWSALYTLQLDDAAKTLSRLTPFGCVDYSPSISQSEDLVAVASYGFRPWGGEFHHLETDIVVFRQSDPTNRWLVCSKGGWPTWSGDSVIYFHRQADDGWWSIFRLELPSKFEISGKKFPPPAPRRVTPPGFHCFTPAAMHN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G106100
TK1151 IDTkA08G106100
OH-1004 IDLXL04_009611
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)40.500
Protein coverage (%)TK1151 95.122 / OH-1004 91.813
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G106100
LocationChr08:27653491-27658145 (-)
DescriptionSimilar to tolB: Tol-Pal system protein TolB (Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009611 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0017038 protein import Biological Process
GO:0051301 cell division Biological Process
KEGG gene cross-reference
cte:CT0636
gme:Gmet_3540
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.342
Rank 1 · TkA08G106100 · TK1151
Endoplasmic reticulum0.183
Rank 2 · TkA08G106100 · TK1151
Nucleus0.170
Rank 3 · TkA08G106100 · TK1151
Cell membrane0.140
Rank 4 · TkA08G106100 · TK1151
Lysosome / Vacuole0.109
Rank 5 · TkA08G106100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07676PD4042-80 aa
PF26549Tricorn_N95-141 aa
PF00930DPPIV_N103-159 aa
PF07676PD40124-153 aa
PF00400WD40185-195 aa
PF26549Tricorn_N198-211 aa
PF07676PD40251-408 aa
PF00930DPPIV_N263-292 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G106100PF07676PD4042802.2e-29103.2
TkA08G106100PF26549Tricorn_N951414.4e-2692.5
TkA08G106100PF00930DPPIV_N1031591.5e-0524.6
TkA08G106100PF07676PD401241532.2e-29103.2
TkA08G106100PF00400WD401851950.03315.5
TkA08G106100PF26549Tricorn_N1982114.4e-2692.5
TkA08G106100PF07676PD402514082.2e-29103.2
TkA08G106100PF00930DPPIV_N2632921.5e-0524.6
TkA08G106100PF26550Tricorn_2nd2713138.9e-0831.9
TkA08G106100PF26549Tricorn_N3504124.4e-2692.5
TkA08G106100PF00930DPPIV_N3513641.5e-0524.6
TkA08G106100PF25174Beta-prop_THOC33544030.1511.8
TkA08G106100PF26550Tricorn_2nd3554058.9e-0831.9
TkA08G106100PF25460Beta-prop_Aladin3593830.3310.7
TkA08G106100PF25460Beta-prop_Aladin3824080.3310.7
TkA08G106100PF00930DPPIV_N3924641.5e-0524.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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