TkA08G103130 | RubberDandelionOmics

Gene overview

TkA08G103130

Reference: TK1151 Chr: Chr08 Coordinates: 26763067-26765178 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1142 bp · TkA08G103130|TK1151|cDNA

CTTTGTTAAACACTTAAACCTAAAAACACACGGCTAATTTCCACATTCTTTTCGAGGTTCTTTTCTCTTCTCGCTTCTCTGCTAAAATAGACTCGGGATAGGTCAACACCAACCAGCTCACGTTGTATTCAGCAGTAGAACGATGACTCAAGAGGCGGGTGGTCGCAATCGTAAGCGTAAGAGGAGAAACAACCACCCGAAAACTGAAACCTCCTCAATAAAGCAGACCTCCACCTCCACCGCCGCTGCCAATTCGACAG...

CDS

Download CDS FASTA

846 bp · TkA08G103130|TK1151|CDS

ATGACTCAAGAGGCGGGTGGTCGCAATCGTAAGCGTAAGAGGAGAAACAACCACCCGAAAACTGAAACCTCCTCAATAAAGCAGACCTCCACCTCCACCGCCGCTGCCAATTCGACAGTCAAACAACCGCCTTCAACCTGCACTGTATCTAAAACTACCCCAAAGCCATTATCTTTCCTCGAAAAGATGAAAGCTAAATTAGCAGGAGGACATTTTCGTATGATTAACGAGAAGCTTTATACCTGCTCTGGAGATGAAGC...

Protein

Download Protein FASTA

281 aa · TkA08G103130|TK1151|PROTEIN

MTQEAGGRNRKRKRRNNHPKTETSSIKQTSTSTAAANSTVKQPPSTCTVSKTTPKPLSFLEKMKAKLAGGHFRMINEKLYTCSGDEALNYFKDDPSLFNMYHTGYQEQMSRWPEQPVNIIIKWLKDHNSSLVVADFGCGDARLAKGVKNKVFSIDLVSKDPSVIACDMANTPLDSSTIDVAVFCLSLMGTNFPNYIQEAQRVLKPSGWLLIAEVKSRFDPNTGGADPDRFCQAVCELGFTSVSKDFSNKMFILLYFKKKP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G103130`
TK1151 ID	TkA08G103130
OH-1004 ID	LXL04_031364
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G103130

Location Chr08:26763067-26765178 (+)

Description Similar to At5g40530: Ribosomal RNA-processing protein 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g40530`	Probable methyltransferase required to silence rDNA.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031364 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000183 rDNA heterochromatin formation Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006364 rRNA processing Biological Process

GO:0031167 rRNA methylation Biological Process

GO:0032259 methylation Biological Process

GO:0042149 cellular response to glucose starvation Biological Process

GO:0042273 ribosomal large subunit biogenesis Biological Process

GO:0045786 negative regulation of cell cycle Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0046015 regulation of transcription by glucose Biological Process

GO:0097009 energy homeostasis Biological Process

GO:1903450 regulation of G1 to G0 transition Biological Process

KEGG gene cross-reference

ath:AT5G40530

hsa:23378

mmu:101867

rno:308911

spo:2543219

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.892

Rank 1 · TkA08G103130 · TK1151

Cytoplasm0.192

Rank 2 · TkA08G103130 · TK1151

Mitochondrion0.055

Rank 3 · TkA08G103130 · TK1151

Cell membrane0.019

Rank 4 · TkA08G103130 · TK1151

Endoplasmic reticulum0.010

Rank 5 · TkA08G103130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13489Methyltransf_2354-72 aa

PF05148Methyltransf_861-281 aa

PF05175MTS119-184 aa

PF13489Methyltransf_23123-218 aa

PF13649Methyltransf_25133-151 aa

PF08241Methyltransf_11135-211 aa

PF13649Methyltransf_25162-207 aa

PF13847Methyltransf_31162-215 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G103130	`PF13489`	Methyltransf_23	54	72	0.00019	21.9
TkA08G103130	`PF05148`	Methyltransf_8	61	281	4.2e-81	272.7
TkA08G103130	`PF05175`	MTS	119	184	0.0043	17.4
TkA08G103130	`PF13489`	Methyltransf_23	123	218	0.00019	21.9
TkA08G103130	`PF13649`	Methyltransf_25	133	151	0.00013	23.3
TkA08G103130	`PF08241`	Methyltransf_11	135	211	7.1e-07	30.5
TkA08G103130	`PF13649`	Methyltransf_25	162	207	0.00013	23.3
TkA08G103130	`PF13847`	Methyltransf_31	162	215	0.00027	21.4
TkA08G103130	`PF20922`	Anamorsin_N	169	244	0.067	13.6
TkA08G103130	`PF05175`	MTS	195	211	0.0043	17.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84JC0`	Arabidopsis thaliana	sp\|Q84JC0\|RRP8_ARATH Ribosomal RNA-processing protein 8	74.200%	Swiss-Prot	High

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