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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G103000
Reference: TK1151 Chr: Chr08 Coordinates: 26706725-26713103 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3230 bp · TkA08G103000|TK1151|cDNA

TTAAATTTCAAAACCCCGCGCTGTCTTTCCATCTCCAACAAACACATACGCCTATAGCTATAGATATACATATACATGTATAGATTCATATACACACACATTAACACACCCAACGATAGTGAAAATGGAATTGCAGAACGGATTCAAGCTTTTGCTTCAACAATACAAAGCTTTGTTCACGAAGAACTTGCTGCTCGCATGGCGGAACAAGAGGGCTACATTCCTTCAGTTATTTTCATCAATATTCTTCATATTTTTAC...

CDS

Download CDS FASTA

2808 bp · TkA08G103000|TK1151|CDS

ATGGAATTGCAGAACGGATTCAAGCTTTTGCTTCAACAATACAAAGCTTTGTTCACGAAGAACTTGCTGCTCGCATGGCGGAACAAGAGGGCTACATTCCTTCAGTTATTTTCATCAATATTCTTCATATTTTTACTTTTCGTTTTTCAAAAAGCAACTAATGCTCAATTCGGAACTTCGACTGCCTTCAAGGCTGTACGAGATCCCGAGCCGCTAATCGATCCTCCCATCCCTCCGTGTGAGGATAAGTATTACATTAA...

Protein

Download Protein FASTA

935 aa · TkA08G103000|TK1151|PROTEIN

MELQNGFKLLLQQYKALFTKNLLLAWRNKRATFLQLFSSIFFIFLLFVFQKATNAQFGTSTAFKAVRDPEPLIDPPIPPCEDKYYIKLPCFDFVWSGSDSARIGSIVDQIRANNPGRPIPSTKVKQFRTKTDVDAWFFANPMSCPGALHFVERNATVISYGLQTNSTPIAKRGHYEDPTFKFTIPLQIAAEREIARSLIGDPGFSWVVNLKEFAHPVVETYSSVAIVGPTFFLAIAMFGFVLQISSLITEKELKLRQAMA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G103000
TK1151 IDTkA08G103000
OH-1004 IDLXL04_031363
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)83.200
Protein coverage (%)TK1151 100.000 / OH-1004 99.896
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G103000
LocationChr08:26706725-26713103 (-)
DescriptionSimilar to ABCA2: ABC transporter A family member 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g47730 ABC transporter A family member 2. No verified direct reference in this release
At5g61690 ABC transporter A family member 11. No verified direct reference in this release
At5g61730 Mediates the transport of acyl-CoAs and/or free fatty acids to the endoplasmic reticulum.
AtABCA9 transporter supplies fatty acids for lipid synthesis to the endoplasmic reticulum.2013 · DOI: 10.1073/pnas.1214159110
At3g47780 ABC transporter A family member 7. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031363 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006641 triglyceride metabolic process Biological Process
GO:0006869 lipid transport Biological Process
GO:0010867 positive regulation of triglyceride biosynthetic process Biological Process
GO:0034197 triglyceride transport Biological Process
GO:0048316 seed development Biological Process
GO:0048317 seed morphogenesis Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0016020 membrane Cellular Component
GO:0005319 lipid transporter activity Molecular Function
KEGG gene cross-reference
ath:AT3G47730
ath:AT3G47780
ath:AT5G61690
ath:AT5G61730
ddi:DDB_G0291994
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.450
Rank 1 · TkA08G103000 · TK1151
Lysosome / Vacuole0.287
Rank 2 · TkA08G103000 · TK1151
Cytoplasm0.204
Rank 3 · TkA08G103000 · TK1151
Endoplasmic reticulum0.146
Rank 4 · TkA08G103000 · TK1151
Golgi apparatus0.133
Rank 5 · TkA08G103000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01061ABC2_membrane12-49 aa
PF12698ABC2_membrane_336-57 aa
PF12698ABC2_membrane_3222-437 aa
PF01061ABC2_membrane226-349 aa
PF03215Rad17543-577 aa
PF00005ABC_tran544-690 aa
PF13175AAA_15546-574 aa
PF13476AAA_23549-575 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G103000PF01061ABC2_membrane12490.5410.5
TkA08G103000PF12698ABC2_membrane_336572.1e-1764.0
TkA08G103000PF12698ABC2_membrane_32224372.1e-1764.0
TkA08G103000PF01061ABC2_membrane2263490.5410.5
TkA08G103000PF03215Rad175435770.3311.6
TkA08G103000PF00005ABC_tran5446905.9e-2485.9
TkA08G103000PF13175AAA_155465740.1512.3
TkA08G103000PF13476AAA_235495752e-0526.1
TkA08G103000PF13604AAA_305535770.1912.2
TkA08G103000PF02463SMC_N5545720.02514.7
TkA08G103000PF13304AAA_215565769.6e-1452.7
TkA08G103000PF01078Mg_chelatase5576040.2111.6
TkA08G103000PF13304AAA_216457229.6e-1452.7
TkA08G103000PF02463SMC_N6527320.02514.7
TkA08G103000PF01078Mg_chelatase6686930.2111.6
TkA08G103000PF13175AAA_156817190.1512.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q84K47Arabidopsis thalianasp|Q84K47|AB2A_ARATH ABC transporter A family member 268.800%Swiss-ProtHigh
Q9FKF2Arabidopsis thalianasp|Q9FKF2|AB11A_ARATH ABC transporter A family member 1164.900%Swiss-ProtHigh
Q9FLT5Arabidopsis thalianasp|Q9FLT5|AB9A_ARATH ABC transporter A family member 965.200%Swiss-ProtHigh
Q9STT5Arabidopsis thalianasp|Q9STT5|AB7A_ARATH ABC transporter A family member 733.800%Swiss-ProtMedium

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