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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G100020
Reference: TK1151 Chr: Chr08 Coordinates: 25910050-25914381 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2918 bp · TkA08G100020|TK1151|cDNA

TAGATAAAGCAGTCGGTGCGATTTACACTCGTCTGGATCTACTCCGCTCTTTTGGCCTCTATATTTCCCCATCACATTCTCATTAAATTCCACCAATCCGCGTTCTCTCTGAGTACCACCACTCTCCCTCTCCACCGGGGCTCTGCCATTTTCTTGAAGCCGATGAACCTTAAAGCTTAACATTTCTGTCAGATCTTCAAGAACAATCACAAAGGTTCATACAAAAACAGGATTAAATTTCAGTCATGGCTCAGGGAAAA...

CDS

Download CDS FASTA

2325 bp · TkA08G100020|TK1151|CDS

ATGGCTCAGGGAAAATATTCCCGAGTCGATGGGAAGAAGTCATCGTGTTCCACAGCTACAATTGTGGTTGTTGTCGGTGTTTGTCTAGTTGCAGTATGGATGTTCATGTCATCATCAGCTGCCCCCGGTCAGACTCCCGATCTGCCCGCTGTCACAGATTCAAACCAAAAAGTGTCCGCAAACCCTTCTTCCCAATTTGAAGACAATTCCGGTGACCTACCGGATGATGCAGTGAAAGAAACGACCCAAAATGGAGGCGA...

Protein

Download Protein FASTA

774 aa · TkA08G100020|TK1151|PROTEIN

MAQGKYSRVDGKKSSCSTATIVVVVGVCLVAVWMFMSSSAAPGQTPDLPAVTDSNQKVSANPSSQFEDNSGDLPDDAVKETTQNGGDSNSEESNSTTNDVEINTGDDSTPSEEKSTSEESNTNSDSNEGEKSDFGNNSDSNETETSNSGDTDSNSSSNSDSNESGKTDSEEEKTKSDEKIQKEEEKQTEESSSDNKTVDFSAATQSEISKETNTQNGAFSTQAAESASEKEAQTPSSSKSYKWKTCNVTAGPDYIPCLDN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G100020
TK1151 IDTkA08G100020
OH-1004 IDLXL04_031288
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G100020
LocationChr08:25910050-25914381 (-)
DescriptionSimilar to At1g29470: Probable methyltransferase PMT24
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g64030 Probable methyltransferase PMT26. No verified direct reference in this release
At1g29470 Probable methyltransferase PMT24. No verified direct reference in this release
At2g34300 Probable methyltransferase PMT25. No verified direct reference in this release
At3g51070 Probable methyltransferase PMT27. No verified direct reference in this release
At2g40280 Probable methyltransferase PMT23. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031288 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0032259 methylation Biological Process
GO:0000137 Golgi cis cisterna Cellular Component
GO:0000139 Golgi membrane Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005768 endosome Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005797 Golgi medial cisterna Cellular Component
KEGG gene cross-reference
ath:AT1G29470
ath:AT2G34300
ath:AT2G40280
ath:AT3G51070
ath:AT5G64030
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.689
Rank 1 · TkA08G100020 · TK1151
Cell membrane0.116
Rank 2 · TkA08G100020 · TK1151
Endoplasmic reticulum0.080
Rank 3 · TkA08G100020 · TK1151
Extracellular0.075
Rank 4 · TkA08G100020 · TK1151
Cytoplasm0.053
Rank 5 · TkA08G100020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19168DUF585021-96 aa
PF19168DUF5850138-184 aa
PF19168DUF5850183-225 aa
PF08242Methyltransf_12220-265 aa
PF03141Methyltransf_29253-757 aa
PF13847Methyltransf_31370-496 aa
PF13649Methyltransf_25371-463 aa
PF08241Methyltransf_11372-466 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G100020PF19168DUF585021960.1313.4
TkA08G100020PF19168DUF58501381840.1313.4
TkA08G100020PF19168DUF58501832250.1313.4
TkA08G100020PF08242Methyltransf_122202650.009617.3
TkA08G100020PF03141Methyltransf_292537572.6e-234779.2
TkA08G100020PF13847Methyltransf_313704961.5e-0732.0
TkA08G100020PF13649Methyltransf_253714631e-0733.3
TkA08G100020PF08241Methyltransf_113724662.7e-1144.7
TkA08G100020PF08242Methyltransf_123724650.009617.3
TkA08G100020PF20922Anamorsin_N4284750.0007719.9
TkA08G100020PF13649Methyltransf_256757171e-0733.3
TkA08G100020PF08242Methyltransf_126787190.009617.3
TkA08G100020PF13847Methyltransf_316827461.5e-0732.0
TkA08G100020PF08241Methyltransf_116837212.7e-1144.7
TkA08G100020PF20922Anamorsin_N7037330.0007719.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8L7V3Arabidopsis thalianasp|Q8L7V3|PMTQ_ARATH Probable methyltransferase PMT2674.700%Swiss-ProtHigh
Q6NPR7Arabidopsis thalianasp|Q6NPR7|PMTO_ARATH Probable methyltransferase PMT2466.800%Swiss-ProtHigh
Q0WT31Arabidopsis thalianasp|Q0WT31|PMTP_ARATH Probable methyltransferase PMT2564.300%Swiss-ProtHigh
Q9SD39Arabidopsis thalianasp|Q9SD39|PMTR_ARATH Probable methyltransferase PMT2773.000%Swiss-ProtMedium
Q9SIZ3Arabidopsis thalianasp|Q9SIZ3|PMTN_ARATH Probable methyltransferase PMT2353.800%Swiss-ProtMedium

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