LXL04_031288 | RubberDandelionOmics

Gene overview

LXL04_031288

Reference: OH-1004 Chr: Chr07 Coordinates: 4143273-4148464 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2325 bp · LXL04_031288|LXL04_031288|OH1004|cDNA

ATGGCTCAGGGAAAATATTCCCGAGTCGATGGGAAGAAGTCATCGTGTTCCACAGCTACAATTGTGGTTGTTGTCGGTGTTTGTCTAGTTGCAGTATGGATGTTCATGTCATCATCAGCTGCCCCCGGTCAGACTCCCGACCTGCCCGCTGTCACAGATTCAAACCAAAAAGTGTCCGCAAACCCTTCTTCCCAATTTGAAGACAATTCCGGTGACCTACCGGATGATGCAGTGAAAGAAACGACCCAAAATGGAGGCGA...

CDS

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2325 bp · LXL04_031288|LXL04_031288|OH1004|CDS

ATGGCTCAGGGAAAATATTCCCGAGTCGATGGGAAGAAGTCATCGTGTTCCACAGCTACAATTGTGGTTGTTGTCGGTGTTTGTCTAGTTGCAGTATGGATGTTCATGTCATCATCAGCTGCCCCCGGTCAGACTCCCGACCTGCCCGCTGTCACAGATTCAAACCAAAAAGTGTCCGCAAACCCTTCTTCCCAATTTGAAGACAATTCCGGTGACCTACCGGATGATGCAGTGAAAGAAACGACCCAAAATGGAGGCGA...

Protein

Download Protein FASTA

774 aa · LXL04_031288|LXL04_031288|OH1004|PROTEIN

MAQGKYSRVDGKKSSCSTATIVVVVGVCLVAVWMFMSSSAAPGQTPDLPAVTDSNQKVSANPSSQFEDNSGDLPDDAVKETTQNGGDSNSEESNSTTNDVEINTGDDSTPSEEKSTSEESNTNSDSNEGEKSDSGNNSDSNETETSNSGDTDSNSSSNSDSNESGKTDSEEEKTKSDEKIQKEEEKQTEESSTDNKTVDFSAATQSEISKETNTQNGAFSTQAAESASEKEAQTPSSSKSYKWKTCNVTAGPDYIPCLDN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031288`
TK1151 ID	TkA08G100020
OH-1004 ID	LXL04_031288
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031288

Location Chr07:4143273-4148464 (-)

Description Similar to At1g29470: Probable methyltransferase PMT24

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g29470`	Probable methyltransferase PMT24.	No verified direct reference in this release
`At5g64030`	Probable methyltransferase PMT26.	No verified direct reference in this release
`At2g34300`	Probable methyltransferase PMT25.	No verified direct reference in this release
`At3g51070`	Probable methyltransferase PMT27.	No verified direct reference in this release
`At2g40280`	Probable methyltransferase PMT23.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031288 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0032259 methylation Biological Process

GO:0000137 Golgi cis cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

KEGG gene cross-reference

ath:AT1G29470

ath:AT2G34300

ath:AT2G40280

ath:AT3G51070

ath:AT5G64030

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.689

Rank 1 · LXL04_031288 · OH-1004

Cell membrane0.117

Rank 2 · LXL04_031288 · OH-1004

Endoplasmic reticulum0.080

Rank 3 · LXL04_031288 · OH-1004

Extracellular0.076

Rank 4 · LXL04_031288 · OH-1004

Cytoplasm0.053

Rank 5 · LXL04_031288 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03141.23Methyltransf_29253-757 aa

PF13649.13Methyltransf_25371-463 aa

PF08241.19Methyltransf_11372-466 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031288	`PF03141.23`	Methyltransf_29	253	757	2.6e-234	779.2
LXL04_031288	`PF13649.13`	Methyltransf_25	371	463	1e-07	33.3
LXL04_031288	`PF08241.19`	Methyltransf_11	372	466	2.7e-11	44.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6NPR7`	Arabidopsis thaliana	Probable methyltransferase PMT24	63.368%	Swiss-Prot	strong database homology
`Q8L7V3`	Arabidopsis thaliana	Probable methyltransferase PMT26	58.604%	Swiss-Prot	strong database homology
`Q0WT31`	Arabidopsis thaliana	Probable methyltransferase PMT25	62.404%	Swiss-Prot	strong database homology
`Q9SD39`	Arabidopsis thaliana	Probable methyltransferase PMT27	52.022%	Swiss-Prot	strong database homology
`Q9SIZ3`	Arabidopsis thaliana	Probable methyltransferase PMT23	53.802%	Swiss-Prot	moderate database homology

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