TkA08G099560 | RubberDandelionOmics

Gene overview

TkA08G099560

Reference: TK1151 Chr: Chr08 Coordinates: 25828605-25829238 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

396 bp · TkA08G099560|TK1151|cDNA

ATGCAAGTGTGTTACGAGGAGACATGTGAGAATGAGGATGAACTCATAGCAAAGGCGGACCGTTCACCGGTATTCAGAGCCATGCTTGAAATCGAAGAGGATGAAATTCCGAGTGACACGATTAAAGTAAGTGGTGTATCATACGATGCCCTAAGTGTGTTTGTGAACTATCTGTACACAGCGAGAGTATATCTTGATGAACAAATGGCGTGTGATCTCATAGTGCTGGCTGAAAAATACAAAGTGAAGAATCTCAAGAC...

CDS

Download CDS FASTA

396 bp · TkA08G099560|TK1151|CDS

ATGCAAGTGTGTTACGAGGAGACATGTGAGAATGAGGATGAACTCATAGCAAAGGCGGACCGTTCACCGGTATTCAGAGCCATGCTTGAAATCGAAGAGGATGAAATTCCGAGTGACACGATTAAAGTAAGTGGTGTATCATACGATGCCCTAAGTGTGTTTGTGAACTATCTGTACACAGCGAGAGTATATCTTGATGAACAAATGGCGTGTGATCTCATAGTGCTGGCTGAAAAATACAAAGTGAAGAATCTCAAGAC...

Protein

Download Protein FASTA

131 aa · TkA08G099560|TK1151|PROTEIN

MQVCYEETCENEDELIAKADRSPVFRAMLEIEEDEIPSDTIKVSGVSYDALSVFVNYLYTARVYLDEQMACDLIVLAEKYKVKNLKTCCEHNAKRLLDAALPLILDNMEELIKSEDYRELVNEDPRLVGFY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G099560`
TK1151 ID	TkA08G099560
OH-1004 ID	LXL04_031284
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	56.500
Protein coverage (%)	TK1151 83.969 / OH-1004 50.192 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G099560

Location Chr08:25828605-25829238 (-)

Description Similar to At4g08455: BTB/POZ domain-containing protein At4g08455

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g08455`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031284 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000209 protein polyubiquitination Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0030162 regulation of proteolysis Biological Process

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0016607 nuclear speck Cellular Component

GO:0031463 Cul3-RING ubiquitin ligase complex Cellular Component

GO:0031625 ubiquitin protein ligase binding Molecular Function

GO:0042802 identical protein binding Molecular Function

GO:0140678 molecular function inhibitor activity Molecular Function

KEGG gene cross-reference

mmu:399675

xla:379868

xla:779391

xtr:394599

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.551

Rank 1 · TkA08G099560 · TK1151

Nucleus0.356

Rank 2 · TkA08G099560 · TK1151

Extracellular0.135

Rank 3 · TkA08G099560 · TK1151

Mitochondrion0.048

Rank 4 · TkA08G099560 · TK1151

Cell membrane0.040

Rank 5 · TkA08G099560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00651BTB20-93 aa

PF30957HAC6_N37-61 aa

PF30957HAC6_N72-95 aa

PF24570BACK_BPM_SPOP75-125 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G099560	`PF00651`	BTB	20	93	9.7e-12	45.8
TkA08G099560	`PF30957`	HAC6_N	37	61	0.077	13.5
TkA08G099560	`PF30957`	HAC6_N	72	95	0.077	13.5
TkA08G099560	`PF24570`	BACK_BPM_SPOP	75	125	0.044	14.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q6DBN1`	Arabidopsis thaliana	sp\|Q6DBN1\|Y4845_ARATH BTB/POZ domain-containing protein At4g08455	55.000%	Swiss-Prot	High

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