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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G099130
Reference: TK1151 Chr: Chr08 Coordinates: 25685149-25693924 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3259 bp · TkA08G099130|TK1151|cDNA

AAATTAAAGGGAACAAGAACTTGGGAACAGCCCCACAGAAAGGGCATAAACTGAAACCCCTGTTCACGATTTGAACAGAGCGCAGTCGTCATCGGCATCTCAGCACCGAAGAAATTTCACACCTTTGTTAACCAAATTCAACCCCTTCCCTCCTTTATCCATCTCCACTATCTAGCATCAGCACTTGCTCATAAGTGAAAAACCCCTTTGCTCATCAACTATGGCGGCGGCGGCGGCGGCTACATGGCAACCCCAAGAAG...

CDS

Download CDS FASTA

2676 bp · TkA08G099130|TK1151|CDS

ATGGCGGCGGCGGCGGCGGCTACATGGCAACCCCAAGAAGGAGGGTTCAACGAGATCTGTGGGTTACTAGAGCAACAGATTTCTCCTTCTTCCGATAAATCTCAGATATGGCAGCAGCTCCAGCGCTACTCTCATATTCCCGATTTCAATAATTACCTCGCCTTCATCCTAGCACGCGCCGAGGGTAAACCAGTGGAGGTTCGACAGGCAGCTGGATTATTTCTGAAAAACAATCTCAAAACTGCATTCAAATCCATGAC...

Protein

Download Protein FASTA

891 aa · TkA08G099130|TK1151|PROTEIN

MAAAAAATWQPQEGGFNEICGLLEQQISPSSDKSQIWQQLQRYSHIPDFNNYLAFILARAEGKPVEVRQAAGLFLKNNLKTAFKSMTPINQAYIKAELLPCLGSADRQIRSTSGTIISVLVQLEGVLGWPELLHALVKCLDSNDLTHMEGAMDALSKICEDIPQVLDAENPGSSERPIDVFLPRLFQLFQSPHALLRKLALGCVNQYIMLMPPVLYMSMDSYLQGLFVLANDPSSEVRKLVCSAFVQLIEVRPSFLEPHL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G099130
TK1151 IDTkA08G099130
OH-1004 IDLXL04_031275
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G099130
LocationChr08:25685149-25693924 (-)
DescriptionSimilar to TRN1: Transportin-1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g16950 Functions in nuclear protein import as nuclear transport receptor. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0691500 Functions in nuclear protein import as nuclear transport receptor. No verified direct reference in this release
UniProt: B8ARW2 Functions in nuclear protein import as nuclear transport receptor. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031275 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006606 protein import into nucleus Biological Process
GO:0051170 import into nucleus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005929 cilium Cellular Component
GO:0070062 extracellular exosome Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008139 nuclear localization sequence binding Molecular Function
GO:0031267 small GTPase binding Molecular Function
KEGG gene cross-reference
ath:AT2G16950
dosa:Os04g0691500
hsa:3842
mmu:238799
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.771
Rank 1 · TkA08G099130 · TK1151
Cytoplasm0.556
Rank 2 · TkA08G099130 · TK1151
Cell membrane0.034
Rank 3 · TkA08G099130 · TK1151
Mitochondrion0.033
Rank 4 · TkA08G099130 · TK1151
Endoplasmic reticulum0.027
Rank 5 · TkA08G099130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21047HEAT_Maestro21-43 aa
PF03810IBN_N37-104 aa
PF12348CLASP_N53-113 aa
PF22928INTS1_R494-159 aa
PF12717Cnd195-158 aa
PF24987HEAT_EF3_N96-164 aa
PF22958Ltn1_1st97-168 aa
PF02985HEAT98-122 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G099130PF21047HEAT_Maestro21430.0001722.3
TkA08G099130PF03810IBN_N371042.7e-1350.4
TkA08G099130PF12348CLASP_N531137.5e-0626.4
TkA08G099130PF22928INTS1_R4941590.003717.9
TkA08G099130PF12717Cnd1951580.0008320.2
TkA08G099130PF24987HEAT_EF3_N961648.6e-0626.5
TkA08G099130PF22958Ltn1_1st971680.01115.9
TkA08G099130PF02985HEAT981227.5e-1863.7
TkA08G099130PF13646HEAT_2981672.3e-1247.8
TkA08G099130PF25780TPR_IPO51242651.2e-1765.4
TkA08G099130PF10508Proteasom_PSMB1262040.210.8
TkA08G099130PF03130HEAT_PBS1271410.3712.2
TkA08G099130PF24714TOR1L1_N1291591.6e-0938.3
TkA08G099130PF13513HEAT_EZ1301581.3e-37128.3
TkA08G099130PF23271HEAT_GCN11301641.7e-1351.8
TkA08G099130PF23227HEAT_MROH2B_C1311622e-1041.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8H0U4Arabidopsis thalianasp|Q8H0U4|TNPO1_ARATH Transportin-170.600%Swiss-ProtHigh
B9FDR3Oryza sativa subsp. japonicasp|B9FDR3|TNPO1_ORYSJ Transportin-173.300%Swiss-ProtHigh
B8ARW2Oryza sativa subsp. indicasp|B8ARW2|TNPO1_ORYSI Transportin-173.000%Swiss-ProtHigh

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