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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G096730
Reference: TK1151 Chr: Chr08 Coordinates: 25014607-25020084 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3997 bp · TkA08G096730|TK1151|cDNA

TTTAATTAAAAAAAGGGGAAAAGAAAAAGCAAGGCGTTGGAAATAGAAATTGTCTCCTCATTATTATTAATTTTCCAATTCGTCTCTCTGGCGGAATTCTTCTCTTTTGCCATCTTTGACTCTGTATTTGCTCGGACGCCACCCCCTTCTTCAATCCGGTTCTTTCGCTCCTGCCGGAGCCGCCACCGGTAATTCGCTTCGAAAATCTTTGCTCTGTCCACCCTTTCCTAGATACTAGTTGTCGTGAGAATCTGAAATCC...

CDS

Download CDS FASTA

1479 bp · TkA08G096730|TK1151|CDS

ATGGTAGTGGCCGGACGAGAGTGTGTGATTTCGATTGATAATGACGGAGATATTACAGCGGCGTCTGGCGGCGGTGCTGGTGGTGGTCCGGTGAATTCGTCACATGGAATGGCAGATCTTGTTAGCTACGGTAACGCCGATCGTGACATTGAGCAGGCATTAATTGCTCTGAAGAAGGGCGCACAGTTACTTAAATATGGTCGCAAGGGGAAGCCAAAATTTTGTCCATTTAGACTTTCCCATGATGAATCATCTCTAAT...

Protein

Download Protein FASTA

492 aa · TkA08G096730|TK1151|PROTEIN

MVVAGRECVISIDNDGDITAASGGGAGGGPVNSSHGMADLVSYGNADRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSHDESSLIWISGSGESSLKLASVSRIIPGQRTAVFRRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSWQGGRSKIDGWSDGGLYLDDNKDLASNSASDSSITPDVSVSSKTSSNFDKPHAITDNPNMQIKNGSNSDAFRVSVSSAPSTSSHGSGPDDCDALGDVYI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G096730
TK1151 IDTkA08G096730
OH-1004 IDLXL04_031244
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.600
Protein coverage (%)TK1151 92.683 / OH-1004 44.229
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G096730
LocationChr08:25014607-25020084 (+)
DescriptionSimilar to PRAF1: PH, RCC1 and FYVE domains-containing protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g76950 Binds to phosphatidic acid and to phosphoinositides such as PtdIns3P, PtdIns(3,4)P(2), PtdIns(3,4,5)P(3) and PtdIns(4,5)P(2). No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031244 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009411 response to UV Biological Process
GO:0009649 entrainment of circadian clock Biological Process
GO:0010224 response to UV-B Biological Process
GO:0010374 stomatal complex development Biological Process
GO:0000785 chromatin Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009536 plastid Cellular Component
GO:0003682 chromatin binding Molecular Function
GO:0005085 guanyl-nucleotide exchange factor activity Molecular Function
KEGG gene cross-reference
ath:AT1G76950
ath:AT5G63860
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.448
Rank 1 · TkA08G096730 · TK1151
Nucleus0.267
Rank 2 · TkA08G096730 · TK1151
Cell membrane0.235
Rank 3 · TkA08G096730 · TK1151
Golgi apparatus0.113
Rank 4 · TkA08G096730 · TK1151
Lysosome / Vacuole0.096
Rank 5 · TkA08G096730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16457PH_1251-159 aa
PF25406PH_3156-119 aa
PF25406PH_31121-160 aa
PF25390WD40_RLD256-492 aa
PF00415RCC1256-310 aa
PF13540RCC1_2256-262 aa
PF13540RCC1_2298-323 aa
PF25384Alsin_RLD309-425 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G096730PF16457PH_12511591.6e-0939.0
TkA08G096730PF25406PH_31561190.03114.6
TkA08G096730PF25406PH_311211600.03114.6
TkA08G096730PF25390WD40_RLD2564929.1e-43147.7
TkA08G096730PF00415RCC12563109.8e-43145.2
TkA08G096730PF13540RCC1_22562627.3e-2586.8
TkA08G096730PF13540RCC1_22983237.3e-2586.8
TkA08G096730PF25384Alsin_RLD3094251.5e-0731.6
TkA08G096730PF00415RCC13133629.8e-43145.2
TkA08G096730PF13540RCC1_23493767.3e-2586.8
TkA08G096730PF00415RCC13664179.8e-43145.2
TkA08G096730PF13540RCC1_24044327.3e-2586.8
TkA08G096730PF00415RCC14204699.8e-43145.2
TkA08G096730PF25384Alsin_RLD4214681.5e-0731.6
TkA08G096730PF13540RCC1_24574697.3e-2586.8
TkA08G096730PF13540RCC1_24824917.3e-2586.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q947D2Arabidopsis thalianasp|Q947D2|PRAF1_ARATH PH, RCC1 and FYVE domains-containing protein 171.700%Swiss-ProtHigh

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