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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G083670
Reference: TK1151 Chr: Chr08 Coordinates: 21537303-21539743 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1406 bp · TkA08G083670|TK1151|cDNA

CTACATTTCACACACGATCTTTCTCTCCTACCCTATGTCCCTATGTCCCTCTTCTACGAATCGAATTCTAAACATCTCGTCTGCAACACTAACCAAACACTTCCCCTCTCCCTACACTTCCTCCATATCTACAATTGCCTTTTCTTCGCAGCCATTTCTCGATTAATCTTTGAAGAATTTAGGGTCAAATCTCGGTTCCAAGTTATAATATAACTACAAGTTGCAAACTCTGAGGATCTTGAATTTGAAGTCAAAGCTAA...

CDS

Download CDS FASTA

1038 bp · TkA08G083670|TK1151|CDS

ATGACGGTTTTGATAGAAGGTCTCCCGGACGCAGTCGCGCTGAGGTGTCTAGCGCGGGTCCCATTCTACCTCCACCCTAGACTCGAGCTCGTATCGCGCGCATGGCGGGACGCGGTCCATAGCACGGAGCTTTTCAAAGCCCGCGAAGAAGTCAAATCCACCGAACACTTCCTCTGCGTATCCGCGTTCGACCCCGAAAATACCTGGCAACTGTACGACCCGACCCGCGACATTTGGCTCACTCTTCCCGTTCTACCATC...

Protein

Download Protein FASTA

345 aa · TkA08G083670|TK1151|PROTEIN

MTVLIEGLPDAVALRCLARVPFYLHPRLELVSRAWRDAVHSTELFKAREEVKSTEHFLCVSAFDPENTWQLYDPTRDIWLTLPVLPSRVRNLAHFGVVSVAGKLFVMGGGSDAVDPLTGDQDGSFATSEVWAYDPVARLWAPRAHMLVPRAMFACCVLDGRIVVAGGFTTCRKSISKAEIYHPEKNTWVSIQDLNHTHNSACSGLVIGGKMHVVHKGLTTVQVLEKDGWAVHEHSWAQGPMAVVNGDLYVMSHGLIYRQE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G083670
TK1151 IDTkA08G083670
OH-1004 IDLXL04_036955
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)74.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G083670
LocationChr08:21537303-21539743 (+)
DescriptionSimilar to SKIP30: F-box/kelch-repeat protein SKIP30
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g63220 Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. No verified direct reference in this release
At1g16250 F-box/kelch-repeat protein At1g16250. No verified direct reference in this release
At1g22040 F-box/kelch-repeat protein At1g22040. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036955 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006995 cellular response to nitrogen starvation Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:2000762 regulation of phenylpropanoid metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT1G16250
ath:AT1G27420
ath:AT1G55270
ath:AT1G67480
ath:AT3G63220
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.510
Rank 1 · TkA08G083670 · TK1151
Nucleus0.444
Rank 2 · TkA08G083670 · TK1151
Cell membrane0.099
Rank 3 · TkA08G083670 · TK1151
Endoplasmic reticulum0.065
Rank 4 · TkA08G083670 · TK1151
Mitochondrion0.042
Rank 5 · TkA08G083670 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box6-45 aa
PF12937F-box-like6-46 aa
PF25210Kelch_FKB9565-112 aa
PF24981Beta-prop_ATRN-LZTR167-110 aa
PF24681Kelch_KLHDC2_KLHL20_DRC769-206 aa
PF01344Kelch_171-79 aa
PF13415Beta-prop_FBX4276-232 aa
PF13964Beta-prop_Calicin76-199 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G083670PF00646F-box6450.0001222.5
TkA08G083670PF12937F-box-like6460.02714.9
TkA08G083670PF25210Kelch_FKB95651121e-1558.8
TkA08G083670PF24981Beta-prop_ATRN-LZTR1671108.1e-0832.6
TkA08G083670PF24681Kelch_KLHDC2_KLHL20_DRC7692061e-0938.8
TkA08G083670PF01344Kelch_171796.2e-2380.7
TkA08G083670PF13415Beta-prop_FBX42762323.1e-1040.8
TkA08G083670PF13964Beta-prop_Calicin761994.3e-0936.5
TkA08G083670PF13418Beta-prop_TYW4911100.001119.6
TkA08G083670PF01344Kelch_1931466.2e-2380.7
TkA08G083670PF07646Kelch_2931427.6e-1554.7
TkA08G083670PF24981Beta-prop_ATRN-LZTR11251968.1e-0832.6
TkA08G083670PF25210Kelch_FKB951262681e-1558.8
TkA08G083670PF13418Beta-prop_TYW41262970.001119.6
TkA08G083670PF01344Kelch_11491946.2e-2380.7
TkA08G083670PF07646Kelch_21501927.6e-1554.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M1W7Arabidopsis thalianasp|Q9M1W7|SKI30_ARATH F-box/kelch-repeat protein SKIP3066.300%Swiss-ProtHigh
Q0WW40Arabidopsis thalianasp|Q0WW40|FBK5_ARATH F-box/kelch-repeat protein At1g1625028.600%Swiss-ProtLow
Q9LM55Arabidopsis thalianasp|Q9LM55|FBK8_ARATH F-box/kelch-repeat protein At1g2204028.700%Swiss-ProtLow

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