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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G080460
Reference: TK1151 Chr: Chr08 Coordinates: 20681412-20689468 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4107 bp · TkA08G080460|TK1151|cDNA

ATAAACATCAAGAAAAATAAAACCATAGACATTGGTGCGTACACTTCCCCCCCATTTCGGTTATCGTTTTTCTACTCCGGTCCACGATTTGGGCGTTTAGTAAACCCTCAGTCCCCGCTGTATCCGGCCAAAAATCCCAAATTCCCAATCATCCCGCCATAACTGTACCATTTCCCGAATCCCCCAACCTACACACCTATCCACCCCAGAGAAACCTGCTTTAGGGTTTCAGTAGCATGCCAGCAATGGATCTGCAAGGC...

CDS

Download CDS FASTA

1863 bp · TkA08G080460|TK1151|CDS

ATGCCAGCAATGGATCTGCAAGGCAAAATTCATCGAATCGAACTCGAGAACTTCAAATCCTACAAAGGACACCAAGTTATTGGTCCTTTCAATGACTTCACCGCGATTATTGGTCCCAACGGTTCTGGGAAGTCTAACCTCATGGACGCTATAAGCTTCGTGCTCGGTGTTCGAACCGGTCAACTCAGGGGTGCACAGTTGAAGGACTTGATTTATGCTTTTGAAGACCGGGATAAGGAGCAACGAGGTCGTAAGGCTTT...

Protein

Download Protein FASTA

620 aa · TkA08G080460|TK1151|PROTEIN

MPAMDLQGKIHRIELENFKSYKGHQVIGPFNDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFEDRDKEQRGRKAFVKLVYRLGNGTELLFTRTITSAGGSEYRLDDRVVNWDDYNAKLKSLGILVKARNFLVFQGDVESVASKNPRELTVLIEQISGSDEDKRLYEDLEEKKGAAEEKSTLAYQKKRTIVMERKQKKEQKEEAEKHMRLQEELRSLKMEHFLWQLFNIQNDVEKANEEIEDEQSSLQE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G080460
TK1151 IDTkA08G080460
OH-1004 IDLXL04_018741
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)98.600
Protein coverage (%)TK1151 95.484 / OH-1004 48.684
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G080460
LocationChr08:20681412-20689468 (+)
DescriptionSimilar to SMC1: Structural maintenance of chromosomes protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g54670 Central component of cohesin, a complex required for chromosome cohesion during the cell cycle.
Condensin and cohesin knockouts in Arabidopsis exhibit a titan seed phenotype.2002 · DOI: 10.1046/j.1365-313x.2002.01224.x
Cohesin gene defects may impair sister chromatid alignment and genome stability in Arabidopsis thaliana.2009 · DOI: 10.1007/s00412-009-0220-x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018741 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000070 mitotic sister chromatid segregation Biological Process
GO:0006281 DNA repair Biological Process
GO:0007059 chromosome segregation Biological Process
GO:0007062 sister chromatid cohesion Biological Process
GO:0007064 mitotic sister chromatid cohesion Biological Process
GO:0009314 response to radiation Biological Process
GO:0019827 stem cell population maintenance Biological Process
GO:0034087 establishment of mitotic sister chromatid cohesion Biological Process
GO:0051301 cell division Biological Process
GO:0051321 meiotic cell cycle Biological Process
GO:0072423 response to DNA damage checkpoint signaling Biological Process
GO:0090307 mitotic spindle assembly Biological Process
KEGG gene cross-reference
ath:AT3G54670
bta:282370
hsa:8243
mmu:24061
rno:63996
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.901
Rank 1 · TkA08G080460 · TK1151
Cytoplasm0.155
Rank 2 · TkA08G080460 · TK1151
Mitochondrion0.020
Rank 3 · TkA08G080460 · TK1151
Cell membrane0.020
Rank 4 · TkA08G080460 · TK1151
Extracellular0.014
Rank 5 · TkA08G080460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13175AAA_159-361 aa
PF02463SMC_N10-137 aa
PF13555AAA_2911-55 aa
PF13476AAA_2312-300 aa
PF13304AAA_2133-70 aa
PF06470SMC_hinge50-88 aa
PF13555AAA_29120-128 aa
PF24161CCDC39173-370 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G080460PF13175AAA_1593613.3e-1040.8
TkA08G080460PF02463SMC_N101371.5e-30107.0
TkA08G080460PF13555AAA_2911553e-0937.2
TkA08G080460PF13476AAA_23123005.7e-0731.1
TkA08G080460PF13304AAA_2133704.9e-0834.0
TkA08G080460PF06470SMC_hinge50885.9e-1659.6
TkA08G080460PF13555AAA_291201283e-0937.2
TkA08G080460PF24161CCDC391733702.86.4
TkA08G080460PF13851GAS1752310.01815.1
TkA08G080460PF27241CLIP11802862.68.8
TkA08G080460PF02463SMC_N2062651.5e-30107.0
TkA08G080460PF06470SMC_hinge2342475.9e-1659.6
TkA08G080460PF07889DUF16642392945.17.9
TkA08G080460PF07889DUF16642402665.17.9
TkA08G080460PF13851GAS2413030.01815.1
TkA08G080460PF13175AAA_152714883.3e-1040.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q6Q1P4Arabidopsis thalianasp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 159.400%Swiss-ProtHigh

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