TkA08G078060 | RubberDandelionOmics

Gene overview

TkA08G078060

Reference: TK1151 Chr: Chr08 Coordinates: 20029004-20034902 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3765 bp · TkA08G078060|TK1151|cDNA

CTTCATTAGAAAGGAATATTTTTAGCCGATTTACATGAATCAAACGTTTAAAATAAACCTATCCAAAGTTTATGAACCAGAAAAATATAAAACATAGTTATCACATTGAAAATTAACAAATAATCCGAGTATTGAATTCAAAAAGCGAACAATTCGAAGTACAGCGCCCCCAAAAAAGAGGGTTTAGATCCAGCTTAGCTTTGATGGCCTCCACTTGTCTCCGCCATTAACAATTCTCCTCTTAATTTGCAATTCAAACA...

CDS

Download CDS FASTA

2793 bp · TkA08G078060|TK1151|CDS

ATGACAACTGAGATTCCATGCTCTTCTGGTCAATGGCTTAAGCAAGAACCACCACATTCAGTTCTCAAAGATGGAGTGTTGGCTGGGAAGACTTCAAAGAACAACATATCCATACGAACAGGTGAGGAGTTCTCCATGGAATTTCTTCAAGATCGTGGTATAGTAAATCAAGTACATAATGGACATAGTAACGTCTTATCAAACGGTAATGGAAATGGAAACCGTCATTTAGGTTATGAAGAACTTAGTGTTATGCTTGG...

Protein

Download Protein FASTA

930 aa · TkA08G078060|TK1151|PROTEIN

MTTEIPCSSGQWLKQEPPHSVLKDGVLAGKTSKNNISIRTGEEFSMEFLQDRGIVNQVHNGHSNVLSNGNGNGNRHLGYEELSVMLGLQRVDSVCSSENTSVKGSLSRPNAPSAIDPVPSLAHKPSDDSQSGKIKFICSSGGKILPRPSDGKLRYVGGETRIVSIQKNITWQELVKRTSEYCNQPHTIKYQLPGEDLDALISVSSNEDLQNMIEEYNGLGNLDGSQRLRIFLIPLSEIESSCSIESNGNQQQNPDYQYVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G078060`
TK1151 ID	TkA08G078060
OH-1004 ID	LXL04_018692
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G078060

Location Chr08:20029004-20034902 (+)

Description Similar to SIS8: Probable serine/threonine-protein kinase SIS8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g79570`	RAF-like protein kinase acting, together with RAF24, as a central mediator of a fast response pathway to auxin involving proteins phosphorylation, and leading to rapid cellular responses including membrane depolarization and cytoplasmic streaming.	No verified direct reference in this release
`At2g35050`	RAF-like protein kinase acting, together with RAF20, as a central mediator of a fast response pathway to auxin involving proteins phosphorylation, and leading to rapid cellular responses including membrane depolarization and cytoplasmic streaming.	No verified direct reference in this release
`At1g73660`	Acts as a negative regulator of salt tolerance.	The genetic locus At1g73660 encodes a putative MAPKKK and negatively regulates salt tolerance in Arabidopsis.2008 · DOI: 10.1007/s11103-008-9306-8 SIS8, a putative mitogen-activated protein kinase kinase kinase, regulates sugar-resistant seedling development in Arabidopsis.2014 · DOI: 10.1111/tpj.12404
`At2g17700`	Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides).	A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins.2006 · DOI: 10.1074/jbc.m606580200 The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.2011 · DOI: 10.1104/pp.111.182774

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018692 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005985 sucrose metabolic process Biological Process

GO:0007165 signal transduction Biological Process

GO:0009637 response to blue light Biological Process

GO:0009646 response to absence of light Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0010109 regulation of photosynthesis Biological Process

GO:0010114 response to red light Biological Process

GO:0010928 regulation of auxin mediated signaling pathway Biological Process

GO:0071365 cellular response to auxin stimulus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G79570

ath:AT2G35050

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.503

Rank 1 · TkA08G078060 · TK1151

Cell membrane0.399

Rank 2 · TkA08G078060 · TK1151

Nucleus0.287

Rank 3 · TkA08G078060 · TK1151

Golgi apparatus0.051

Rank 4 · TkA08G078060 · TK1151

Endoplasmic reticulum0.040

Rank 5 · TkA08G078060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08300HCV_NS5a_1a132-160 aa

PF26130PB1-like133-214 aa

PF00564PB1150-232 aa

PF26130PB1-like453-473 aa

PF07714PK_Tyr_Ser-Thr456-498 aa

PF27616DUF8351538-592 aa

PF00069Pkinase648-908 aa

PF07714PK_Tyr_Ser-Thr649-910 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G078060	`PF08300`	HCV_NS5a_1a	132	160	0.18	12.7
TkA08G078060	`PF26130`	PB1-like	133	214	0.054	14.5
TkA08G078060	`PF00564`	PB1	150	232	2.2e-21	76.3
TkA08G078060	`PF26130`	PB1-like	453	473	0.054	14.5
TkA08G078060	`PF07714`	PK_Tyr_Ser-Thr	456	498	1e-65	222.3
TkA08G078060	`PF27616`	DUF8351	538	592	0.18	12.4
TkA08G078060	`PF00069`	Pkinase	648	908	1.8e-48	166.0
TkA08G078060	`PF07714`	PK_Tyr_Ser-Thr	649	910	1e-65	222.3
TkA08G078060	`PF08300`	HCV_NS5a_1a	662	672	0.18	12.7
TkA08G078060	`PF08300`	HCV_NS5a_1a	858	885	0.18	12.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SAJ2`	Arabidopsis thaliana	sp\|Q9SAJ2\|RAF20_ARATH RAF-like serine/threonine-protein kinase 20	36.200%	Swiss-Prot	Medium
`O64768`	Arabidopsis thaliana	sp\|O64768\|RAF24_ARATH RAF-like serine/threonine-protein kinase 24	78.000%	Swiss-Prot	Low
`Q9C9U5`	Arabidopsis thaliana	sp\|Q9C9U5\|SIS8_ARATH Probable serine/threonine-protein kinase SIS8	40.900%	Swiss-Prot	Low
`O22558`	Arabidopsis thaliana	sp\|O22558\|STY8_ARATH Serine/threonine-protein kinase STY8	37.600%	Swiss-Prot	Low

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