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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G077020
Reference: TK1151 Chr: Chr08 Coordinates: 19768134-19771045 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1321 bp · TkA08G077020|TK1151|cDNA

TGTTTAGCTTTAAGACATCCACCGACCCGACCCGTTCATCACGACAACCTTCGGATCTTACCCTGTGTATGTATGTGTACCCCCTTTCTATTTCTTCATAAACCCTAGATAGCAGGGTTAAGAAATCTGAACTCTCCTGTTTGATCATCAGATTCTCGCTCTAGGTTTTCAATCATTCGATAACCGCTGCAGCTCAGGGCCACGTGGGCCACCGGTACACCATCACACCATGAACAACACACAAGGTCAAACAATTATGT...

CDS

Download CDS FASTA

708 bp · TkA08G077020|TK1151|CDS

ATGAACAACACACAAGGTCAAACAATTATGTACGCAAGAGGTGGTAGGAGAAGAAAGATTCTTGATGTTGACCTCAATGACACTCCACCAATTGAAGACCATGACCACGTGGCAGCAAGTCTAGTTCTCTCCTTGACTTATGGTGGACAAGGTGTTGACCATGGTCAAGTGCCCTTCACTGCATCCACTCCAGTTACCCAACCTCTTCAACCACAACCTGTTCCAATCGATGTTGAGGAATTGGATGATGATGTCATCAT...

Protein

Download Protein FASTA

235 aa · TkA08G077020|TK1151|PROTEIN

MNNTQGQTIMYARGGRRRKILDVDLNDTPPIEDHDHVAASLVLSLTYGGQGVDHGQVPFTASTPVTQPLQPQPVPIDVEELDDDVIISSPRAFEQARNSSRRVSRRTSVIDVESAEEVGRYGNNRNQRRRLNQQPQVLSDDSLYVILEGSGSSMDESEPSVTVVPPPPPPPPPEPPTFNCPVCMGPLVEEVTTKCGHIFCKGCIKAAIAAQSKCPTCRRKVTNRELIRIYLPSAS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G077020
TK1151 IDTkA08G077020
OH-1004 IDLXL04_018667
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)94.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G077020
LocationChr08:19768134-19771045 (-)
DescriptionSimilar to RNF4: E3 ubiquitin-protein ligase RNF4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018667 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0006974 DNA damage response Biological Process
GO:0007283 spermatogenesis Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0030154 cell differentiation Biological Process
GO:0032355 response to estradiol Biological Process
GO:0032527 protein exit from endoplasmic reticulum Biological Process
GO:0036503 ERAD pathway Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
GO:0044752 response to human chorionic gonadotropin Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
KEGG gene cross-reference
ath:AT4G03510
hsa:6047
mmu:19822
mmu:67504
rno:29274
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.952
Rank 1 · TkA08G077020 · TK1151
Cytoplasm0.204
Rank 2 · TkA08G077020 · TK1151
Mitochondrion0.020
Rank 3 · TkA08G077020 · TK1151
Cell membrane0.016
Rank 4 · TkA08G077020 · TK1151
Endoplasmic reticulum0.010
Rank 5 · TkA08G077020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15858LCE6A86-106 aa
PF15858LCE6A125-148 aa
PF15858LCE6A172-224 aa
PF09723Zn_ribbon_8175-188 aa
PF26191RING-HC_RBR_RNF216177-209 aa
PF14447Prok-RING_4178-184 aa
PF11789zf-Nse178-217 aa
PF13923zf-C3HC4_2179-217 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G077020PF15858LCE6A861062.39.6
TkA08G077020PF15858LCE6A1251482.39.6
TkA08G077020PF15858LCE6A1722242.39.6
TkA08G077020PF09723Zn_ribbon_81751885.47.8
TkA08G077020PF26191RING-HC_RBR_RNF2161772090.9310.4
TkA08G077020PF14447Prok-RING_41781840.007216.9
TkA08G077020PF11789zf-Nse1782170.113.1
TkA08G077020PF13923zf-C3HC4_21792172.6e-1040.6
TkA08G077020PF13639zf-RING_21792182.9e-0937.7
TkA08G077020PF13920zf-C3HC4_31792236.6e-0832.9
TkA08G077020PF14634zf-RING_51792191.1e-0629.2
TkA08G077020PF16685zf-RING_101792190.00218.9
TkA08G077020PF17123zf-RING_111792040.4211.1
TkA08G077020PF15616TerY_C1792223.18.7
TkA08G077020PF00097zf-C3HC41802171.8e-0938.0
TkA08G077020PF13445zf-RING_UBOX1802157.8e-0729.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

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