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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G068790
Reference: TK1151 Chr: Chr08 Coordinates: 17699107-17702405 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1537 bp · TkA08G068790|TK1151|cDNA

ATATAAACACGTATACAGAATGGAAGATCTGACAGACATAATAACCACCATTTCTCTCTCTTTTATTTCGACAATCTTATTCTCACTCTCTTCTCCAGGCTTTTCTTTTCTTTTCTTTTCTTTTTTTCCTCTTCTTTTTTCTTTTTTTTTCTTCACTTTCTCTTGAAACAAAACCCTAACTTCGCTTTCTATCTCCAAAATACACACTGTATCTATTCCAATCGGAAGATGATGCAACAGCAACAGCATCAGAGGATAAG...

CDS

Download CDS FASTA

1221 bp · TkA08G068790|TK1151|CDS

ATGATGCAACAGCAACAGCATCAGAGGATAAGACAACAACAACAAGCACTGATGCAACAACCACTCTATCACCCAGGTCTCTTAGCTCATCCCCAGATAGAGCCGATCTTGAGTGGAAATTTACCTCCTGGTTTTGATTCAACTACATGTCGGAGTGTGTATGTGGGGAACATTCATCCACAGGTCACAGAACCCCTACTTCAAGAAATTTTTTCAAGCACCGGTGCTCTTGAAGGATGCAAGCTCATTAGAAAAGAGAA...

Protein

Download Protein FASTA

406 aa · TkA08G068790|TK1151|PROTEIN

MMQQQQHQRIRQQQQALMQQPLYHPGLLAHPQIEPILSGNLPPGFDSTTCRSVYVGNIHPQVTEPLLQEIFSSTGALEGCKLIRKENSSYGFVDYFDRRFAALAIVTLNGRHLFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLFSCFSVYTTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLNGKWLGSRQIRCNWAAKGAGSDDKQRSDTKSVVELTNGTSEDGQEKTNEDAPENNPQYTTVYV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G068790
TK1151 IDTkA08G068790
OH-1004 IDLXL04_032282
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)70.800
Protein coverage (%)TK1151 98.768 / OH-1004 99.769
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G068790
LocationChr08:17699107-17702405 (-)
DescriptionSimilar to UBP1B: Oligouridylate-binding protein 1B
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g17370 Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as a component of the pre-mRNA processing machinery. No verified direct reference in this release
At3g14100 Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as a component of the pre-mRNA processing machinery. No verified direct reference in this release
At1g54080 Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as a component of the pre-mRNA processing machinery. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0520300 RNA-binding protein. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032282 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0034063 stress granule assembly Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0010494 cytoplasmic stress granule Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G17370
ath:AT1G54080
ath:AT3G14100
dosa:Os08g0520300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.582
Rank 1 · TkA08G068790 · TK1151
Nucleus0.479
Rank 2 · TkA08G068790 · TK1151
Cell membrane0.060
Rank 3 · TkA08G068790 · TK1151
Lysosome / Vacuole0.036
Rank 4 · TkA08G068790 · TK1151
Mitochondrion0.032
Rank 5 · TkA08G068790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23085RRM_PARP14_350-89 aa
PF16367RRM_751-77 aa
PF16842RRM_occluded52-120 aa
PF09707Cas_Cas2CT197852-92 aa
PF00076RRM_153-119 aa
PF22976RRM_1054-110 aa
PF13893RRM_561-121 aa
PF00313CSD86-98 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G068790PF23085RRM_PARP14_350890.0007420.3
TkA08G068790PF16367RRM_751770.003118.2
TkA08G068790PF16842RRM_occluded521200.00218.7
TkA08G068790PF09707Cas_Cas2CT197852920.0514.4
TkA08G068790PF00076RRM_1531191e-47160.6
TkA08G068790PF22976RRM_10541105e-0524.1
TkA08G068790PF13893RRM_5611210.0002721.3
TkA08G068790PF00313CSD86982.19.0
TkA08G068790PF20601DUF6797911290.05615.0
TkA08G068790PF16367RRM_71371950.003118.2
TkA08G068790PF09707Cas_Cas2CT19781371860.0514.4
TkA08G068790PF00076RRM_11382081e-47160.6
TkA08G068790PF23085RRM_PARP14_31391570.0007420.3
TkA08G068790PF22976RRM_101451985e-0524.1
TkA08G068790PF13893RRM_51462100.0002721.3
TkA08G068790PF05172RRM_Nup351682030.1412.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LQI9Arabidopsis thalianasp|Q9LQI9|UBP1B_ARATH Oligouridylate-binding protein 1B74.000%Swiss-ProtHigh
Q9LJH8Arabidopsis thalianasp|Q9LJH8|UBP1C_ARATH Oligouridylate-binding protein 1C70.200%Swiss-ProtHigh
Q9SYG4Arabidopsis thalianasp|Q9SYG4|UBP1A_ARATH Oligouridylate-binding protein 1A68.200%Swiss-ProtHigh
Q6YZW2Oryza sativa subsp. japonicasp|Q6YZW2|RB208_ORYSJ RNA-binding protein 20862.000%Swiss-ProtHigh

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