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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G066490
Reference: TK1151 Chr: Chr08 Coordinates: 17100466-17104062 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1660 bp · TkA08G066490|TK1151|cDNA

TTACAAAGTGACGCAAGGGGCCATACCCTCGCAGTTCACAGGTGTTAGCATTCTAAAAACCAAACCCTAAACCACTGATCGCTACTGTATTCATCATCTTCTCATCATCGTCAAGCAATCATGGGTTCAGACATGGAGGATTATGGATTTGAGTACTCCGAGGAGGAACCTGAAGAGCAAGATGTCGACATTGAAAATCAATATTACAATTCTAAAGGTTTGGTGGAGACTGATCCAGAGGGTGCACTTACTGGTTTTGC...

CDS

Download CDS FASTA

1314 bp · TkA08G066490|TK1151|CDS

ATGGGTTCAGACATGGAGGATTATGGATTTGAGTACTCCGAGGAGGAACCTGAAGAGCAAGATGTCGACATTGAAAATCAATATTACAATTCTAAAGGTTTGGTGGAGACTGATCCAGAGGGTGCACTTACTGGTTTTGCTGAAGTGGTTCAGATGGAACCCGAGAAAGCAGAATGGGGATTCAAAGCACTTAAACAGACTGTCAAACTTTATTACCGTTTAGGGAGGTACAAGGAGATGACAGAAGCATATAGGGAAAT...

Protein

Download Protein FASTA

437 aa · TkA08G066490|TK1151|PROTEIN

MGSDMEDYGFEYSEEEPEEQDVDIENQYYNSKGLVETDPEGALTGFAEVVQMEPEKAEWGFKALKQTVKLYYRLGRYKEMTEAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFGLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMNKILKELHKSCQKADGSDDQKKGTQLLEVYAIEIQMYTETKNNKKLKQLYQKALTIKSAIPHPRIMGIIHECGGKMHMAERQWAEAATDFFEAFKNYD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G066490
TK1151 IDTkA08G066490
OH-1004 IDLXL04_018525
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.300
Protein coverage (%)TK1151 100.000 / OH-1004 88.105
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G066490
LocationChr08:17100466-17104062 (+)
DescriptionSimilar to CSN2: COP9 signalosome complex subunit 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g26990 Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses.
Characterization of the last subunit of the Arabidopsis COP9 signalosome: implications for the overall structure and origin of the complex.2003 · DOI: 10.1105/tpc.009092

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018525 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0000338 protein deneddylation Biological Process
GO:0006366 transcription by RNA polymerase II Biological Process
GO:0006468 protein phosphorylation Biological Process
GO:0007165 signal transduction Biological Process
GO:0008283 cell population proliferation Biological Process
GO:0009585 red, far-red light phototransduction Biological Process
GO:0009640 photomorphogenesis Biological Process
GO:0030163 protein catabolic process Biological Process
GO:0045116 protein neddylation Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
GO:2000434 regulation of protein neddylation Biological Process
KEGG gene cross-reference
ath:AT2G26990
hsa:9318
mmu:12848
rno:261736
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.651
Rank 1 · TkA08G066490 · TK1151
Cytoplasm0.486
Rank 2 · TkA08G066490 · TK1151
Cell membrane0.064
Rank 3 · TkA08G066490 · TK1151
Endoplasmic reticulum0.051
Rank 4 · TkA08G066490 · TK1151
Golgi apparatus0.044
Rank 5 · TkA08G066490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25064ARM_TT21_5th37-93 aa
PF29407CFAP70_TPR_C50-94 aa
PF14400Transglut_i_TM51-130 aa
PF25410PH_3461-86 aa
PF08771FRB_dom61-92 aa
PF13428TPR_1462-88 aa
PF13181TPR_870-88 aa
PF25410PH_34142-171 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G066490PF25064ARM_TT21_5th37930.1413.2
TkA08G066490PF29407CFAP70_TPR_C50940.04813.9
TkA08G066490PF14400Transglut_i_TM511300.01216.3
TkA08G066490PF25410PH_3461860.0514.2
TkA08G066490PF08771FRB_dom61921.49.9
TkA08G066490PF13428TPR_1462880.0315.7
TkA08G066490PF13181TPR_870880.3911.7
TkA08G066490PF25410PH_341421710.0514.2
TkA08G066490PF25064ARM_TT21_5th1481920.1413.2
TkA08G066490PF08771FRB_dom1512171.49.9
TkA08G066490PF13428TPR_141561730.0315.7
TkA08G066490PF29407CFAP70_TPR_C1792570.04813.9
TkA08G066490PF13428TPR_141962170.0315.7
TkA08G066490PF13181TPR_81982200.3911.7
TkA08G066490PF13428TPR_142392590.0315.7
TkA08G066490PF08771FRB_dom2512651.49.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8W207Arabidopsis thalianasp|Q8W207|CSN2_ARATH COP9 signalosome complex subunit 286.200%Swiss-ProtHigh

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