LXL04_018525 | RubberDandelionOmics

Gene overview

LXL04_018525

Reference: OH-1004 Chr: Chr04 Coordinates: 14267297-14270599 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1516 bp · LXL04_018525|LXL04_018525|OH1004|cDNA

CCAAACCCTAAACCACTGATCGCTACTGTATTCATCATCTTCTCATCATCGTCAAGCAATCATGGGTTCAGGTGAGGTTAAGCTTCATGATTTCTTACTTACGGGTTCAATTTCAGCCACTCAAATCATCCATCTGCAGAAACGCACCGATGCGAAGTGTTTATTGCTTAAGCATGTACTTACaattctctttctctctcattTAGATGCAGACATGGAGGATTATGGATTTGAGTACTccgaggaggaacctgaagagC...

CDS

Download CDS FASTA

1491 bp · LXL04_018525|LXL04_018525|OH1004|CDS

CTGTATTCATCATCTTCTCATCATCGTCAAGCAATCATGGGTTCAGGTGAGGTTAAGCTTCATGATTTCTTACTTACGGGTTCAATTTCAGCCACTCAAATCATCCATCTGCAGAAACGCACCGATGCGAAGTGTTTATTGCTTAAGCATGTACTTACAATTCTCTTTCTCTCTCATTTAGATGCAGACATGGAGGATTATGGATTTGAGTACTCCGAGGAGGAACCTGAAGAGCAAGATGTCGACATTGAAAATCAATA...

Protein

Download Protein FASTA

496 aa · LXL04_018525|LXL04_018525|OH1004|PROTEIN

MYSSSSHHRQAIMGSGEVKLHDFLLTGSISATQIIHLQKRTDAKCLLLKHVLTILFLSHLDADMEDYGFEYSEEEPEEQDVDIENQYYNSKGLVETDPEGALTGFAEVVQMEPEKAEWGFKALKQTVKLYYRLGRYKEMTEAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFGLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMNKILKELHKSCQKADGSDDQKKGTQLLEVYAIEIQMYTE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018525`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018525

Location Chr04:14267297-14270599 (+)

Description Similar to CSN2: COP9 signalosome complex subunit 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g26990`	Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses.	Characterization of the last subunit of the Arabidopsis COP9 signalosome: implications for the overall structure and origin of the complex.2003 · DOI: 10.1105/tpc.009092

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018525 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0000338 protein deneddylation Biological Process

GO:0006366 transcription by RNA polymerase II Biological Process

GO:0006468 protein phosphorylation Biological Process

GO:0007165 signal transduction Biological Process

GO:0008283 cell population proliferation Biological Process

GO:0009585 red, far-red light phototransduction Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0030163 protein catabolic process Biological Process

GO:0045116 protein neddylation Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:2000434 regulation of protein neddylation Biological Process

KEGG gene cross-reference

ath:AT2G26990

hsa:9318

mmu:12848

rno:261736

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.549

Rank 1 · LXL04_018525 · OH-1004

Cytoplasm0.518

Rank 2 · LXL04_018525 · OH-1004

Cell membrane0.070

Rank 3 · LXL04_018525 · OH-1004

Endoplasmic reticulum0.067

Rank 4 · LXL04_018525 · OH-1004

Golgi apparatus0.066

Rank 5 · LXL04_018525 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01399.34PCI383-463 aa

PF25983.1COPS2_C471-495 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018525	`PF01399.34`	PCI	383	463	1.3e-23	83.7
LXL04_018525	`PF25983.1`	COPS2_C	471	495	4.8e-13	49.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8W207`	Arabidopsis thaliana	COP9 signalosome complex subunit 2	86.437%	Swiss-Prot	strong database homology

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