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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G066110
Reference: TK1151 Chr: Chr08 Coordinates: 16993315-16997842 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2720 bp · TkA08G066110|TK1151|cDNA

GCACAATGCACACGGCACACAATAGCTTTTGCCAGCGGAAAAACCTTCCAAGAAACATAAACACAAGCGTATTATATAAAACTATAAAACCCTCTTTTTTGACCTTATCAATTACTCCATCTAATCATCCAAGATCAAACTCATGCTAACATTAATCCTATGCGACAAAAACTTCCAATTTTTCATCAAAATCATTCATTCATACATTCAATCAATTTCTTCTTCTCTCTATCTTACATCGGAAATCAGTAGCTGATCTT...

CDS

Download CDS FASTA

2160 bp · TkA08G066110|TK1151|CDS

ATGATGGCTCAATCTTCGTATAGAGTTCGATCGGTTGGTGATTACGTTGTCGGCAAACAGCTTGGGTCGGGTTCGTTTTCCGTGGTGTGGCACGCGAGGCATAAGGTCCATGGGACGGAAGTTGCTATCAAGGAAATTCTCACCGGAAAATTGAACAAAAAATTGGAAGAGAGTCTCATGTCGGAGATTGACATCTTGAGTAATATTAACCACCCTAATATTATTCGACTGCACGACATGATCAAGGAGCCTGGAAAGAT...

Protein

Download Protein FASTA

719 aa · TkA08G066110|TK1151|PROTEIN

MMAQSSYRVRSVGDYVVGKQLGSGSFSVVWHARHKVHGTEVAIKEILTGKLNKKLEESLMSEIDILSNINHPNIIRLHDMIKEPGKIHLVLEYCKGGDLSMFIQRRQGRIPKSTSLHLMQQLAAGLKVLRDNQIIHRDLKPQNLLLSSNEDNSTLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLHKYDAKADLWSVGAILFQLVTGRTPFTGNNQIQLLQNIMKSTELQFPPDVKDLSPECIDLCRKLLRQNPVE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G066110
TK1151 IDTkA08G066110
OH-1004 IDLXL04_018519
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G066110
LocationChr08:16993315-16997842 (+)
DescriptionSimilar to ATG1C: Serine/threonine-protein kinase ATG1c
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g37840 Serine/threonine protein kinase involved in autophagy. No verified direct reference in this release
At3g53930 Serine/threonine protein kinase involved in autophagy. No verified direct reference in this release
At3g61960 Serine/threonine protein kinase involved in autophagy in a nutritional condition-dependent manner.
The ATG1/ATG13 protein kinase complex is both a regulator and a target of autophagic recycling in Arabidopsis.2011 · DOI: 10.1105/tpc.111.090993
At1g49180 Serine/threonine protein kinase involved in autophagy. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018519 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000045 autophagosome assembly Biological Process
GO:0000422 autophagy of mitochondrion Biological Process
GO:0006914 autophagy Biological Process
GO:0006995 cellular response to nitrogen starvation Biological Process
GO:0009847 spore germination Biological Process
GO:0010506 regulation of autophagy Biological Process
GO:0015031 protein transport Biological Process
GO:0034727 piecemeal microautophagy of the nucleus Biological Process
GO:0048102 autophagic cell death Biological Process
GO:0051365 cellular response to potassium ion starvation Biological Process
GO:0061709 reticulophagy Biological Process
GO:0075016 appressorium formation Biological Process
KEGG gene cross-reference
ath:AT1G49180
ath:AT2G37840
ath:AT3G53930
ath:AT3G61960
mgr:MGG_06393
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.692
Rank 1 · TkA08G066110 · TK1151
Nucleus0.278
Rank 2 · TkA08G066110 · TK1151
Cell membrane0.104
Rank 3 · TkA08G066110 · TK1151
Golgi apparatus0.084
Rank 4 · TkA08G066110 · TK1151
Lysosome / Vacuole0.075
Rank 5 · TkA08G066110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase15-273 aa
PF07714PK_Tyr_Ser-Thr17-267 aa
PF03109ABC121-60 aa
PF04587ADP_PFK_GK44-109 aa
PF03109ABC188-169 aa
PF06293Kdo98-160 aa
PF10707YrbL-PhoP_reg117-161 aa
PF01636APH118-152 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G066110PF00069Pkinase152731.2e-72245.1
TkA08G066110PF07714PK_Tyr_Ser-Thr172673e-48165.1
TkA08G066110PF03109ABC121602.7e-0524.2
TkA08G066110PF04587ADP_PFK_GK441090.1111.9
TkA08G066110PF03109ABC1881692.7e-0524.2
TkA08G066110PF06293Kdo981600.06913.3
TkA08G066110PF10707YrbL-PhoP_reg1171610.01715.5
TkA08G066110PF01636APH1181520.05114.0
TkA08G066110PF17667Pkinase_fungal1242000.003816.7
TkA08G066110PF24497MIT_ATG14866131.5e-45155.1
TkA08G066110PF21127ATG1-like_MIT25135250.008417.1
TkA08G066110PF10707YrbL-PhoP_reg5766060.01715.5
TkA08G066110PF21127ATG1-like_MIT26267020.008417.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4IRW0Arabidopsis thalianasp|F4IRW0|ATG1C_ARATH Serine/threonine-protein kinase ATG1c58.100%Swiss-ProtHigh
F4JBP3Arabidopsis thalianasp|F4JBP3|ATG1B_ARATH Serine/threonine-protein kinase ATG1b56.500%Swiss-ProtHigh
Q94C95Arabidopsis thalianasp|Q94C95|ATG1A_ARATH Serine/threonine-protein kinase ATG1a39.400%Swiss-ProtMedium
F4I1N8Arabidopsis thalianasp|F4I1N8|ATG1T_ARATH Serine/threonine-protein kinase ATG1t46.400%Swiss-ProtLow

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