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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G065250
Reference: TK1151 Chr: Chr08 Coordinates: 16683020-16689926 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4946 bp · TkA08G065250|TK1151|cDNA

GGTAAGTATACTCATGTGGTTCATAGCGAGCTCGACTTTCCACATATAAAACCCCTTTCCTTATTCACACTTATACTCATCTCCCAACAACAAATCGAAAACGCACACAGAAAGCAAGAACGATGGCGAGCAGCAAACCAACGGAAATCGGCAGCTCAAAAATATTTGAAGGTTTCAACAAACGATACAAGCATGACTCACCGACCCTCGGTTGCTCCATGAACTTCCACATCTATTTCCCTCCCTCAACTTCTCCTGAC...

CDS

Download CDS FASTA

3066 bp · TkA08G065250|TK1151|CDS

ATGAGCTCTCACGTCCGAAGTGATACAAGAGATAATAGGCCTAGGTTTCCTCGTCGTCAAGAATGGATTCCCAGAGGATCCTCCACTGCCACGACCACCACCAGTACCACTGCAGTGGATGCTAATTCCTCGCCAGCAGTTGCTCCAATTCCAGATGGAAATGGTAATATTAGATCACAAAATGGTGTTAATAGAGGAAATCAAAGGAGGCACCATATACCTCGACAAAATCAGACTAGAGATAGGAGAAAAGATGCTCC...

Protein

Download Protein FASTA

1021 aa · TkA08G065250|TK1151|PROTEIN

MSSHVRSDTRDNRPRFPRRQEWIPRGSSTATTTTSTTAVDANSSPAVAPIPDGNGNIRSQNGVNRGNQRRHHIPRQNQTRDRRKDAPREERVSTGALPQLVQEIQDKLLKGTIECMICYDMVRRSAPVWSCSSCFSIFHLHCIKKWARAPTSIDLSAEKNQGFNWRCPGCQSVQLTSSKDIRYVCFCGKRQEPPSDPYLTPHSCGEPCGRPLEKEVPGSGSGSGSHSRDDLCPHRCVLQCHPGPCPPCKAFAPPRLCPCG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G065250
TK1151 IDTkA08G065250
OH-1004 IDLXL04_012237
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)35.700
Protein coverage (%)TK1151 50.441 / OH-1004 61.682
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G065250
LocationChr08:16683020-16689926 (-)
DescriptionSimilar to NFXL2: NF-X1-type zinc finger protein NFXL2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g10170 Mediates E2-dependent ubiquitination (By similarity).
The AtNFXL1 gene encodes a NF-X1 type zinc finger protein required for growth under salt stress.2006 · DOI: 10.1016/j.febslet.2006.07.079
AtNFXL1, an Arabidopsis homologue of the human transcription factor NF-X1, functions as a negative regulator of the trichothecene phytotoxin-induced defense response.2008 · DOI: 10.1111/j.1365-313x.2007.03353.x
The AtNFXL1 gene functions as a signaling component of the type A trichothecene-dependent response.2008 · DOI: 10.4161/psb.6291
At2g41530 Serine hydrolase which catalyzes the hydrolysis of S-formylglutathione to glutathione and formic acid (Probable).
Cloning and characterization of an S-formylglutathione hydrolase from Arabidopsis thaliana.2002 · DOI: 10.1006/abbi.2002.2772
Unique regulation of the active site of the serine esterase S-formylglutathione hydrolase.2006 · DOI: 10.1016/j.jmb.2006.03.048

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012237 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0007623 circadian rhythm Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009908 flower development Biological Process
GO:0010310 regulation of hydrogen peroxide metabolic process Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0160062 cutin-based cuticle development Biological Process
KEGG gene cross-reference
ath:AT5G05660
dme:Dmel_CG3647
hsa:152518
xla:779353
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.775
Rank 1 · TkA08G065250 · TK1151
Cytoplasm0.299
Rank 2 · TkA08G065250 · TK1151
Mitochondrion0.036
Rank 3 · TkA08G065250 · TK1151
Cell membrane0.031
Rank 4 · TkA08G065250 · TK1151
Endoplasmic reticulum0.018
Rank 5 · TkA08G065250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01422zf-NF-X1202-208 aa
PF01422zf-NF-X1234-249 aa
PF01422zf-NF-X1289-304 aa
PF01422zf-NF-X1353-370 aa
PF01422zf-NF-X1400-405 aa
PF01422zf-NF-X1411-429 aa
PF01422zf-NF-X1455-460 aa
PF01422zf-NF-X1466-477 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G065250PF01422zf-NF-X12022081.1e-0629.2
TkA08G065250PF01422zf-NF-X12342491.1e-0629.2
TkA08G065250PF01422zf-NF-X12893041.1e-0629.2
TkA08G065250PF01422zf-NF-X13533701.1e-0629.2
TkA08G065250PF01422zf-NF-X14004051.1e-0629.2
TkA08G065250PF01422zf-NF-X14114291.1e-0629.2
TkA08G065250PF01422zf-NF-X14554601.1e-0629.2
TkA08G065250PF01422zf-NF-X14664771.1e-0629.2
TkA08G065250PF01422zf-NF-X14934991.1e-0629.2
TkA08G065250PF01422zf-NF-X15055231.1e-0629.2
TkA08G065250PF01422zf-NF-X15525561.1e-0629.2
TkA08G065250PF01422zf-NF-X15625791.1e-0629.2
TkA08G065250PF01422zf-NF-X16046091.1e-0629.2
TkA08G065250PF01422zf-NF-X16156301.1e-0629.2
TkA08G065250PF01422zf-NF-X16576661.1e-0629.2
TkA08G065250PF01424R3H8028450.01516.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SY59Arabidopsis thalianasp|Q9SY59|NFXL1_ARATH NF-X1-type zinc finger protein NFXL164.600%Swiss-ProtHigh
Q8LAS8Arabidopsis thalianasp|Q8LAS8|SFGH_ARATH S-formylglutathione hydrolase80.200%Swiss-ProtHigh

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