TkA08G065140 | RubberDandelionOmics

Gene overview

TkA08G065140

Reference: TK1151 Chr: Chr08 Coordinates: 16634122-16637743 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2588 bp · TkA08G065140|TK1151|cDNA

TAGGAAATAAGTTATTTTCCATTTTGATTTTTGAAGATATCACGTATTAAATTTAAGAAAAGGAGGCAACTTTGAAAAAAGCATTCGCATAAAGTCCTCGGCAAGTCTTTCAACCGACGACAGAGGGTGAAGGTGAACAGTCGAACGCCTTTTTGGGAATACAATCGATTGGGTTTTCCAGTTCCATCGGAGTTCAAGCTCACTCCAAATCCCACTTGAACCCTAAATCGCAACATACTGTAACTGCAATGGCTAGAGTA...

CDS

Download CDS FASTA

2139 bp · TkA08G065140|TK1151|CDS

ATGGCTAGAGTACATCCAGGGAATCTGAATTCCCGAGTCCCCGATCATCAAACAATTTTTGATCACGTTACCGAAGATCTTCGTAATCAGGATTTTGAGAATAGAACTTACGATGCAGCAAATCCTCGTGGCGGTGGCGGCGGTCGTGGTCGCGGTCGCGGTCGTGGTGGTGGAGTCAGGACTTGTTTTGGCTGCGGTGAACTCGGCCACATTATTCGCGATTGTCCGGCGACTGCCTCTTTTCCACGTAGTAATACACG...

Protein

Download Protein FASTA

712 aa · TkA08G065140|TK1151|PROTEIN

MARVHPGNLNSRVPDHQTIFDHVTEDLRNQDFENRTYDAANPRGGGGGRGRGRGRGGGVRTCFGCGELGHIIRDCPATASFPRSNTRRGNQAFGNDPSISDAIESTSGTSKYTLKPLNAFTPVDITPLLSKIRDKEQELKLSKEQNADLNMRLNKTTKELTSIQTKNEEVILNMNKLKEDLEKIRNELSSARKKETEVSQMYSVMKNKFEELEEANEAADNEMEKLKAETEQWRKAAKAIAVVFNGGEVISSKTPELESL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G065140`
TK1151 ID	TkA08G065140
OH-1004 ID	LXL04_018500
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	91.600
Protein coverage (%)	TK1151 100.000 / OH-1004 80.225 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA08G065140`
Location	Chr08:16634122-16637743 (+)
Description	Similar to DNAJC7: DnaJ homolog subfamily C member 7
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_018500` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006457 protein folding Biological Process GO:0042026 protein refolding Biological Process GO:1900034 regulation of cellular response to heat Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0005856 cytoskeleton Cellular Component GO:0016020 membrane Cellular Component GO:0045335 phagocytic vesicle Cellular Component GO:0070062 extracellular exosome Cellular Component GO:0001671 ATPase activator activity Molecular Function
KEGG gene cross-reference	ddi:DDB_G0288639 hsa:7266 mmu:56354 pon:100173101 spo:2541066 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.545

Rank 1 · TkA08G065140 · TK1151

Nucleus0.378

Rank 2 · TkA08G065140 · TK1151

Mitochondrion0.061

Rank 3 · TkA08G065140 · TK1151

Cell membrane0.059

Rank 4 · TkA08G065140 · TK1151

Peroxisome0.046

Rank 5 · TkA08G065140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00098zf-CCHC60-76 aa

PF13696zf-CCHC_262-76 aa

PF05192MutS_III121-242 aa

PF08614ATG16123-180 aa

PF28159CEP89124-241 aa

PF16515HIP1_clath_bdg124-192 aa

PF27682ICR5_C128-157 aa

PF24161CCDC39129-236 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G065140	`PF00098`	zf-CCHC	60	76	6.3e-05	23.6
TkA08G065140	`PF13696`	zf-CCHC_2	62	76	0.4	11.2
TkA08G065140	`PF05192`	MutS_III	121	242	5.3	8.0
TkA08G065140	`PF08614`	ATG16	123	180	0.025	15.5
TkA08G065140	`PF28159`	CEP89	124	241	3e-06	26.7
TkA08G065140	`PF16515`	HIP1_clath_bdg	124	192	1.1	10.4
TkA08G065140	`PF27682`	ICR5_C	128	157	0.95	11.0
TkA08G065140	`PF24161`	CCDC39	129	236	0.002	16.8
TkA08G065140	`PF06818`	Fez1	130	244	0.0094	17.2
TkA08G065140	`PF02090`	SPAM	132	235	0.39	11.3
TkA08G065140	`PF30554`	Bfr1	134	237	0.043	13.7
TkA08G065140	`PF10473`	CENP-F_leu_zip	135	234	7.4	7.4
TkA08G065140	`PF01496`	V_ATPase_I	136	304	0.068	11.8
TkA08G065140	`PF30835`	CEP83_CC_2nd	138	239	2.8	7.9
TkA08G065140	`PF15035`	Rootletin	143	236	0.018	15.8
TkA08G065140	`PF24245`	INO80F	144	159	7.3	7.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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