TkA08G057950 | RubberDandelionOmics

Gene overview

TkA08G057950

Reference: TK1151 Chr: Chr08 Coordinates: 14807999-14810071 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1417 bp · TkA08G057950|TK1151|cDNA

AATAAACGTAACTAGTTTCTATGAGAATAAAGTAGGAATAAGGAGCAAGAAAATATGGAAAAACAAAATTTGATATTAGTTTCACTTACGCTAGTTTGGTGTTTAGCGTTGGTTGCGAATGTGCAGGGATTCACATACGATGAAAAGGAGATGGCAACGGAGGAGGGGAAGTCGGCGATGTTCGAGAGGTGGCGGACCCATCACAATCTGGAGAAAATAAGCGAGAAAGAAAAAAAACTGCAATTCAACAACTTCAAAAC...

CDS

Download CDS FASTA

1104 bp · TkA08G057950|TK1151|CDS

ATGGAAAAACAAAATTTGATATTAGTTTCACTTACGCTAGTTTGGTGTTTAGCGTTGGTTGCGAATGTGCAGGGATTCACATACGATGAAAAGGAGATGGCAACGGAGGAGGGGAAGTCGGCGATGTTCGAGAGGTGGCGGACCCATCACAATCTGGAGAAAATAAGCGAGAAAGAAAAAAAACTGCAATTCAACAACTTCAAAACAAACCTGAAACTCGTTCATGCTACAAACAAGGCGAACAAATCATACAAATTGGA...

Protein

Download Protein FASTA

367 aa · TkA08G057950|TK1151|PROTEIN

MEKQNLILVSLTLVWCLALVANVQGFTYDEKEMATEEGKSAMFERWRTHHNLEKISEKEKKLQFNNFKTNLKLVHATNKANKSYKLEMNRFAGMSHAEVKAKLTGFKAPIRTGQNKLAVTVSELPFRYGNATDVPPKLDWRACGAVGPVKNQEGCGCCYAFAATCTVEGMAVAIGKQKLIELSPKELVDCAHVGGCKGGAMTSSFEWLSKNGGLTTMKNYPYVPKEEPCRVNKKNDCVVEVHGFEHVPHKNEEALLKAVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G057950`
TK1151 ID	TkA08G057950
OH-1004 ID	LXL04_031915
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	58.900
Protein coverage (%)	TK1151 97.003 / OH-1004 96.730 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G057950

Location Chr08:14807999-14810071 (+)

Description Similar to Vignain

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g48350`	Involved in the final stage of developmental programmed cell death and in intercalation of new cells.	No verified direct reference in this release
`At5g50260`	Possesses protease activity in vitro.	KDEL-tailed cysteine endopeptidases involved in programmed cell death, intercalation of new cells, and dismantling of extensin scaffolds.2008 · DOI: 10.3732/ajb.2007404 Endoplasmic reticulum KDEL-tailed cysteine endopeptidase 1 of Arabidopsis (AtCEP1) is involved in pathogen defense.2014 · DOI: 10.3389/fpls.2014.00058 The cysteine protease CEP1, a key executor involved in tapetal programmed cell death, regulates pollen development in Arabidopsis.2014 · DOI: 10.1105/tpc.114.127282

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031915 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009555 pollen development Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0010623 programmed cell death involved in cell development Biological Process

GO:0031667 response to nutrient levels Biological Process

GO:0048658 anther wall tapetum development Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0051603 proteolysis involved in protein catabolic process Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005764 lysosome Cellular Component

KEGG gene cross-reference

ath:AT3G48340

ath:AT3G48350

ath:AT5G50260

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.573

Rank 1 · TkA08G057950 · TK1151

Cytoplasm0.227

Rank 2 · TkA08G057950 · TK1151

Extracellular0.214

Rank 3 · TkA08G057950 · TK1151

Endoplasmic reticulum0.171

Rank 4 · TkA08G057950 · TK1151

Cell membrane0.119

Rank 5 · TkA08G057950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08246Inhibitor_I2943-98 aa

PF13529Peptidase_C39_261-61 aa

PF00112Peptidase_C1134-349 aa

PF03051Peptidase_C1_2147-168 aa

PF13529Peptidase_C39_2262-322 aa

PF03051Peptidase_C1_2292-328 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G057950	`PF08246`	Inhibitor_I29	43	98	1.3e-12	48.5
TkA08G057950	`PF13529`	Peptidase_C39_2	61	61	0.033	15.3
TkA08G057950	`PF00112`	Peptidase_C1	134	349	2.5e-66	224.6
TkA08G057950	`PF03051`	Peptidase_C1_2	147	168	6.4e-05	22.7
TkA08G057950	`PF13529`	Peptidase_C39_2	262	322	0.033	15.3
TkA08G057950	`PF03051`	Peptidase_C1_2	292	328	6.4e-05	22.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9STL5`	Arabidopsis thaliana	sp\|Q9STL5\|CEP3_ARATH KDEL-tailed cysteine endopeptidase CEP3	44.800%	Swiss-Prot	Medium
`Q9FGR9`	Arabidopsis thaliana	sp\|Q9FGR9\|CEP1_ARATH KDEL-tailed cysteine endopeptidase CEP1	44.700%	Swiss-Prot	Medium

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