TkA08G054300 | RubberDandelionOmics

Gene overview

TkA08G054300

Reference: TK1151 Chr: Chr08 Coordinates: 13908105-13910107 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1134 bp · TkA08G054300|TK1151|cDNA

ATGCTTCAAGCAAAAAGAGATGTAGACACCTTGCTAGCTATGGGGATCATGGAAGATGTTAGTATTGTTCCACAGCCTGCTGGAGGCATCTCTGCTGGTGGTGGAATTTCAAGTGGGATCACAAGTGGCCCTTTAGCAGGACTTATCGGAAGTAGTGCACTATATCATCGAAATCTTTTTGGGAGAAACCAAAAGGTAAATCTTTCACTTGAAAGGGGACAAATTGACTCGATATTCAGGATCAATTACACAGATCCATG...

CDS

Download CDS FASTA

1134 bp · TkA08G054300|TK1151|CDS

ATGCTTCAAGCAAAAAGAGATGTAGACACCTTGCTAGCTATGGGGATCATGGAAGATGTTAGTATTGTTCCACAGCCTGCTGGAGGCATCTCTGCTGGTGGTGGAATTTCAAGTGGGATCACAAGTGGCCCTTTAGCAGGACTTATCGGAAGTAGTGCACTATATCATCGAAATCTTTTTGGGAGAAACCAAAAGGTAAATCTTTCACTTGAAAGGGGACAAATTGACTCGATATTCAGGATCAATTACACAGATCCATG...

Protein

Download Protein FASTA

377 aa · TkA08G054300|TK1151|PROTEIN

MLQAKRDVDTLLAMGIMEDVSIVPQPAGGISAGGGISSGITSGPLAGLIGSSALYHRNLFGRNQKVNLSLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTLVHGNQPNNTNLTIGRVTAGIEYSRPFRPKWSGTAGLIFQRAGARDEKGDPMIRDFHSSPLIARCTTYFCMVLAKLESVYTGSSDPSSSMLVVNMEQGLPVWLDLLVFNRVTGRARKGLVIGPACFNLSVCGGHVVGNFPPHEAFLIGGTN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G054300`
TK1151 ID	TkA08G054300
OH-1004 ID	LXL04_004426
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	91.500
Protein coverage (%)	TK1151 95.756 / OH-1004 57.710 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G054300

Location Chr08:13908105-13910107 (+)

Description Similar to OEP80: Outer envelope protein 80, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g19620`	Plays an essential role during early stages of plastid development.	The Omp85-related chloroplast outer envelope protein OEP80 is essential for viability in Arabidopsis.2008 · DOI: 10.1104/pp.108.122754
`At3g44160`	Beta-barrel pore-forming protein which possesses voltage-dependent channel activity.	No verified direct reference in this release
`At3g48620`	May play a role during plastid development.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2X208`	Outer envelope protein 80, chloroplastic.	No verified direct reference in this release
`Os02g0196300`	Outer envelope protein 80, chloroplastic.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004426 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009658 chloroplast organization Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0030162 regulation of proteolysis Biological Process

GO:1900057 positive regulation of leaf senescence Biological Process

GO:1901002 positive regulation of response to salt stress Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009707 chloroplast outer membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0016020 membrane Cellular Component

GO:0032991 protein-containing complex Cellular Component

GO:0015267 channel activity Molecular Function

KEGG gene cross-reference

ath:AT3G44160

ath:AT3G48620

ath:AT5G19620

dosa:Os02g0196300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.881

Rank 1 · TkA08G054300 · TK1151

Mitochondrion0.066

Rank 2 · TkA08G054300 · TK1151

Cytoplasm0.052

Rank 3 · TkA08G054300 · TK1151

Lysosome / Vacuole0.038

Rank 4 · TkA08G054300 · TK1151

Cell membrane0.033

Rank 5 · TkA08G054300 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01103Omp8558-360 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G054300	`PF01103`	Omp85	58	360	1.1e-57	196.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C5J8`	Arabidopsis thaliana	sp\|Q9C5J8\|OEP80_ARATH Outer envelope protein 80, chloroplastic	75.700%	Swiss-Prot	High
`Q5PP51`	Arabidopsis thaliana	sp\|Q5PP51\|SP2_ARATH Protein SUPPRESSOR OF PPI1 LOCUS 2, chloroplastic	37.800%	Swiss-Prot	Medium
`F4JF35`	Arabidopsis thaliana	sp\|F4JF35\|OEP36_ARATH Outer envelope protein 36, chloroplastic	32.200%	Swiss-Prot	Medium
`A2X208`	Oryza sativa subsp. indica	sp\|A2X208\|OEP80_ORYSI Outer envelope protein 80, chloroplastic	70.000%	Swiss-Prot	High
`Q6H7M7`	Oryza sativa subsp. japonica	sp\|Q6H7M7\|OEP80_ORYSJ Outer envelope protein 80, chloroplastic	68.700%	Swiss-Prot	High

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