LXL04_004426 | RubberDandelionOmics

Gene overview

LXL04_004426

Reference: OH-1004 Chr: Chr01 Coordinates: 135543707-135547213 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2004 bp · LXL04_004426|LXL04_004426|OH1004|cDNA

ATGCCGGAAAATAAGTCCCTCCAGTTCAAGTCATCATTTATCAAAATTCCTCCTTTTGTCCCTATTCATCACCACCGGCACCAACACCATCGTCGCCGCCCACTTCCTCCCTTCGCCGATCTCCATCTTTCCATCTCCTCAGCTTTTAACAATTCCAAACACTCACTCACCCAATTCATATCTTCTATTAGAAAATTCCCACCGATAACTTTATCGAGCAAGACTCATACGGCGAGCCGACATGACGACGAGCGTGTGCT...

CDS

Download CDS FASTA

1968 bp · LXL04_004426|LXL04_004426|OH1004|CDS

ATGCCGGAAAATAAGTCCCTCCAGTTCAAGTCATCATTTATCAAAATTCCTCCTTTTGTCCCTATTCATCACCACCGGCACCAACACCATCGTCGCCGCCCACTTCCTCCCTTCGCCGATCTCCATCTTTCCATCTCCTCAGCTTTTAACAATTCCAAACACTCACTCACCCAATTCATATCTTCTATTAGAAAATTCCCACCGATAACTTTATCGAGCAAGACTCATACGGCGAGCCGACATGACGACGAGCGTGTGCT...

Protein

Download Protein FASTA

655 aa · LXL04_004426|LXL04_004426|OH1004|PROTEIN

MPENKSLQFKSSFIKIPPFVPIHHHRHQHHRRRPLPPFADLHLSISSAFNNSKHSLTQFISSIRKFPPITLSSKTHTASRHDDERVLISEVLVRNKDGEELERKDLEEEAVAALKTCRPNSALTVREVQEDVHRIIGSGYFSSCMPVAVDTRDGIRLVFQVEPNQDFQGLVCEGANVLPTKFVEDAFRDGYGKIVNIRRLDQVISSINGWYMERGLFGLVSGMEILSGGILRLQVSEAEVNNISVRFISRTGEPTTGKTR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004426`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_004426

Location Chr01:135543707-135547213 (-)

Description Similar to OEP80: Outer envelope protein 80, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g19620`	Plays an essential role during early stages of plastid development.	The Omp85-related chloroplast outer envelope protein OEP80 is essential for viability in Arabidopsis.2008 · DOI: 10.1104/pp.108.122754
`At3g44160`	Beta-barrel pore-forming protein which possesses voltage-dependent channel activity.	No verified direct reference in this release
`At3g48620`	May play a role during plastid development.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2X208`	Outer envelope protein 80, chloroplastic.	No verified direct reference in this release
`Os02g0196300`	Outer envelope protein 80, chloroplastic.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004426 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009658 chloroplast organization Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0030162 regulation of proteolysis Biological Process

GO:1900057 positive regulation of leaf senescence Biological Process

GO:1901002 positive regulation of response to salt stress Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009707 chloroplast outer membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0016020 membrane Cellular Component

GO:0032991 protein-containing complex Cellular Component

GO:0015267 channel activity Molecular Function

KEGG gene cross-reference

ath:AT3G44160

ath:AT3G48620

ath:AT5G19620

dosa:Os02g0196300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.957

Rank 1 · LXL04_004426 · OH-1004

Mitochondrion0.051

Rank 2 · LXL04_004426 · OH-1004

Cytoplasm0.029

Rank 3 · LXL04_004426 · OH-1004

Nucleus0.027

Rank 4 · LXL04_004426 · OH-1004

Peroxisome0.016

Rank 5 · LXL04_004426 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07244.21POTRA258-318 aa

PF01103.30Omp85352-654 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004426	`PF07244.21`	POTRA	258	318	1e-10	42.9
LXL04_004426	`PF01103.30`	Omp85	352	654	9.5e-60	203.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C5J8`	Arabidopsis thaliana	Outer envelope protein 80, chloroplastic	79.931%	Swiss-Prot	strong database homology
`Q5PP51`	Arabidopsis thaliana	Protein SUPPRESSOR OF PPI1 LOCUS 2, chloroplastic	40.248%	Swiss-Prot	weak database homology
`F4JF35`	Arabidopsis thaliana	Outer envelope protein 36, chloroplastic	34.629%	Swiss-Prot	weak database homology
`A2X208`	Oryza sativa subsp. indica	Outer envelope protein 80, chloroplastic	75.652%	Swiss-Prot	strong database homology
`Q6H7M7`	Oryza sativa subsp. japonica	Outer envelope protein 80, chloroplastic	75.478%	Swiss-Prot	strong database homology

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