TkA08G023010 | RubberDandelionOmics

Gene overview

TkA08G023010

Reference: TK1151 Chr: Chr08 Coordinates: 5822396-5823403 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

683 bp · TkA08G023010|TK1151|cDNA

CTAACATTCATCAATATATCAAGAATCATAACAAACGAAAGATTAGGGTTCCTAGTCTTCATCATCTTCTTCTCTAGCGCAGGCGCCGGCTACTCTTTGTTGCAGCGAAAATGGTGAAAGGCCGTCAAGGGGAACGTGTCAGACTCTACACAAGAGGAACAGTTCTCGGATACAAAAGGTCGAAGTCGAACCAGTACCCAAACACATCGTTGGTACAAATTGAAGGAGTTAATACTAAGGAGGAGGTTTCATGGTACCAA...

CDS

Download CDS FASTA

339 bp · TkA08G023010|TK1151|CDS

ATGGTGAAAGGCCGTCAAGGGGAACGTGTCAGACTCTACACAAGAGGAACAGTTCTCGGATACAAAAGGTCGAAGTCGAACCAGTACCCAAACACATCGTTGGTACAAATTGAAGGAGTTAATACTAAGGAGGAGGTTTCATGGTACCAAGGGAAGCGCTTGGCGTACATCTACAAGGCCAAGGTGAAGAGGGACGGGTCACACTATCGTTGCATTTGGGGTAAAGTTACCAGGCCTCATGGTAACACTGGTGTTGTTCG...

Protein

Download Protein FASTA

112 aa · TkA08G023010|TK1151|PROTEIN

MVKGRQGERVRLYTRGTVLGYKRSKSNQYPNTSLVQIEGVNTKEEVSWYQGKRLAYIYKAKVKRDGSHYRCIWGKVTRPHGNTGVVRAKFTSNLPPKSMGARVRVFMYPSNI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G023010`
TK1151 ID	TkA08G023010
OH-1004 ID	LXL04_018162
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 60.714 / OH-1004 52.713 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G023010

Location Chr08:5822396-5823403 (-)

Description Similar to RPL35AA: 60S ribosomal protein L35a-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g07070`	Large ribosomal subunit protein eL33w.	No verified direct reference in this release
`At1g74270`	Large ribosomal subunit protein eL33y.	No verified direct reference in this release
`At3g55750`	Large ribosomal subunit protein eL33x.	No verified direct reference in this release
`At1g41880`	Large ribosomal subunit protein eL33z.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018162 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002181 cytoplasmic translation Biological Process

GO:0042273 ribosomal large subunit biogenesis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:0003729 mRNA binding Molecular Function

GO:0003735 structural constituent of ribosome Molecular Function

KEGG gene cross-reference

ath:AT1G07070

ath:AT1G41880

ath:AT1G74270

ath:AT3G55750

sce:YOR234C

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.867

Rank 1 · TkA08G023010 · TK1151

Nucleus0.245

Rank 2 · TkA08G023010 · TK1151

Endoplasmic reticulum0.079

Rank 3 · TkA08G023010 · TK1151

Mitochondrion0.026

Rank 4 · TkA08G023010 · TK1151

Plastid0.022

Rank 5 · TkA08G023010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01782RimM11-55 aa

PF01247Ribosomal_L35Ae12-106 aa

PF01782RimM73-95 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G023010	`PF01782`	RimM	11	55	0.00063	20.6
TkA08G023010	`PF01247`	Ribosomal_L35Ae	12	106	6.3e-44	148.8
TkA08G023010	`PF01782`	RimM	73	95	0.00063	20.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LMK0`	Arabidopsis thaliana	sp\|Q9LMK0\|R35A1_ARATH Large ribosomal subunit protein eL33w	90.200%	Swiss-Prot	High
`Q9C912`	Arabidopsis thaliana	sp\|Q9C912\|R35A3_ARATH Large ribosomal subunit protein eL33y	90.200%	Swiss-Prot	High
`P51422`	Arabidopsis thaliana	sp\|P51422\|R35A4_ARATH Large ribosomal subunit protein eL33x	91.000%	Swiss-Prot	High
`Q9FZH0`	Arabidopsis thaliana	sp\|Q9FZH0\|R35A2_ARATH Large ribosomal subunit protein eL33z	90.100%	Swiss-Prot	High

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