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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G020710
Reference: TK1151 Chr: Chr08 Coordinates: 5183218-5185662 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1702 bp · TkA08G020710|TK1151|cDNA

ATGGTTCCACCGCCGTGCTCTCATTTGGCAGAGTTCAAGGCCGGACGAGGGGCTGCGGCGTTTGGTAAGTTACTGGAACGCATTCAAGTGAGTCCGCTCGGACGCGCCTCTGTGCGAAGGAAACCTAATGAGATCTTCCGGTGCGGCGCGTGCAGACAATCGTCACCGCGGCTGTACGCCTGCGTGTCCTGTCCTGCTGTCGTTTGTGACATACACGCGCCGGATCACGAGCACGAGATCGCCATCGACGTGGATCGAGC...

CDS

Download CDS FASTA

1554 bp · TkA08G020710|TK1151|CDS

ATGGTTCCACCGCCGTGCTCTCATTTGGCAGAGTTCAAGGCCGGACGAGGGGCTGCGGCGTTTGGTAAGTTACTGGAACGCATTCAAGTGAGTCCGCTCGGACGCGCCTCTGTGCGAAGGAAACCTAATGAGATCTTCCGGTGCGGCGCGTGCAGACAATCGTCACCGCGGCTGTACGCCTGCGTGTCCTGTCCTGCTGTCGTTTGTGACATACACGCGCCGGATCACGAGCACGAGATCGCCATCGACGTGGATCGAGC...

Protein

Download Protein FASTA

517 aa · TkA08G020710|TK1151|PROTEIN

MVPPPCSHLAEFKAGRGAAAFGKLLERIQVSPLGRASVRRKPNEIFRCGACRQSSPRLYACVSCPAVVCDIHAPDHEHEIAIDVDRAELFCHSCGDQIYDRDFDSAIVLSQTAAATLGGCNSLYAPPPENLRKRRRVDYRPWTPDPKERALLGTNSSFSPGNNEGAPSNSNFPVGLKGLNNLGSTCFMNSVLQALLHTPPLRNYFLSDRHNRFLCQQKNGESLCLACDTDALFSAVFSGDRKPYSPVKLLYSLWQRSGNL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G020710
TK1151 IDTkA08G020710
OH-1004 IDLXL04_018198
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)94.500
Protein coverage (%)TK1151 100.000 / OH-1004 93.664
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G020710
LocationChr08:5183218-5185662 (-)
DescriptionSimilar to UBP22: Ubiquitin C-terminal hydrolase 22
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g10790 Component of a deubiquitination module (DUB module) that specifically deubiquitinates monoubiquitinated histone H2B (H2Bub).
The Adaptor Protein ENY2 Is a Component of the Deubiquitination Module of the Arabidopsis SAGA Transcriptional Co-activator Complex but not of the TREX-2 Complex.2018 · DOI: 10.1016/j.jmb.2018.03.018
DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis.2018 · DOI: 10.7554/elife.37892

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018198 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000086 G2/M transition of mitotic cell cycle Biological Process
GO:0006282 regulation of DNA repair Biological Process
GO:0006325 chromatin organization Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0006508 proteolysis Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0016579 protein deubiquitination Biological Process
GO:0032481 positive regulation of type I interferon production Biological Process
GO:0043484 regulation of RNA splicing Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0045931 positive regulation of mitotic cell cycle Biological Process
KEGG gene cross-reference
ath:AT5G10790
bta:509694
hsa:23326
mmu:216825
xla:444339
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.734
Rank 1 · TkA08G020710 · TK1151
Cytoplasm0.258
Rank 2 · TkA08G020710 · TK1151
Cell membrane0.044
Rank 3 · TkA08G020710 · TK1151
Mitochondrion0.041
Rank 4 · TkA08G020710 · TK1151
Endoplasmic reticulum0.026
Rank 5 · TkA08G020710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13423UCH_130-55 aa
PF03107C1_241-69 aa
PF02148zf-UBP48-102 aa
PF03107C1_275-99 aa
PF28086HVO_214287-94 aa
PF11682Zn_ribbon_1190-101 aa
PF00443UCH178-503 aa
PF13423UCH_1178-483 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G020710PF13423UCH_130552.2e-1971.0
TkA08G020710PF03107C1_241690.03215.3
TkA08G020710PF02148zf-UBP481029.5e-0626.5
TkA08G020710PF03107C1_275990.03215.3
TkA08G020710PF28086HVO_214287943.58.2
TkA08G020710PF11682Zn_ribbon_11901011.29.6
TkA08G020710PF00443UCH1785032.1e-58198.6
TkA08G020710PF13423UCH_11784832.2e-1971.0
TkA08G020710PF03107C1_22102300.03215.3
TkA08G020710PF02148zf-UBP2152279.5e-0626.5
TkA08G020710PF11682Zn_ribbon_112192311.29.6
TkA08G020710PF02148zf-UBP2622759.5e-0626.5
TkA08G020710PF03107C1_23103200.03215.3
TkA08G020710PF02148zf-UBP3123189.5e-0626.5
TkA08G020710PF11682Zn_ribbon_113133171.29.6
TkA08G020710PF03107C1_23623720.03215.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LEW0Arabidopsis thalianasp|Q9LEW0|UBP22_ARATH Ubiquitin C-terminal hydrolase 2247.300%Swiss-ProtMedium

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