TkA08G018150 | RubberDandelionOmics

Gene overview

TkA08G018150

Reference: TK1151 Chr: Chr08 Coordinates: 4491871-4492920 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1005 bp · TkA08G018150|TK1151|cDNA

ATGGGGAAAGGAGGAGCCCTAAGCGAAGGCGTATTGAAGAAGATCATCCTTTCCTACACCTACGTCGCAATATGGATCACTCTCAGCTTCACCGTCATCGTCTACAACAAATACATCCTCGATCGGAAGATGTACGATTGGCCTTACCCAATCTCACTAACCATGATCCACATGGTCGTCGAACCAGTTCAGATGACTCGCGATATCTATTTCAAATCCGTCGTTCCAATCGGTTTGCTTTACTCTCTCAGTTTATGGCT...

CDS

Download CDS FASTA

1005 bp · TkA08G018150|TK1151|CDS

ATGGGGAAAGGAGGAGCCCTAAGCGAAGGCGTATTGAAGAAGATCATCCTTTCCTACACCTACGTCGCAATATGGATCACTCTCAGCTTCACCGTCATCGTCTACAACAAATACATCCTCGATCGGAAGATGTACGATTGGCCTTACCCAATCTCACTAACCATGATCCACATGGTCGTCGAACCAGTTCAGATGACTCGCGATATCTATTTCAAATCCGTCGTTCCAATCGGTTTGCTTTACTCTCTCAGTTTATGGCT...

Protein

Download Protein FASTA

334 aa · TkA08G018150|TK1151|PROTEIN

MGKGGALSEGVLKKIILSYTYVAIWITLSFTVIVYNKYILDRKMYDWPYPISLTMIHMVVEPVQMTRDIYFKSVVPIGLLYSLSLWLSNSAYIYLSVSFIQMLKALMPVAVYSIGVLLKKEGFKGDTMTNMLSISFGVAIAAYGEAKFNSWGVMLQLGAVCFEATRLVLIQILLTSKGITFNPITSLYYVAPCCFAFLSIPWIIVEFPKLRDTSSFHFDYFIFGTNSLCAFALNLAVFLLVGKTSALTMNVAGVVKDWLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G018150`
TK1151 ID	TkA08G018150
OH-1004 ID	LXL04_018255
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	95.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G018150

Location Chr08:4491871-4492920 (-)

Description Similar to At5g25400: Probable sugar phosphate/phosphate translocator At5g25400

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g25400`	Probable sugar phosphate/phosphate translocator At5g25400.	No verified direct reference in this release
`At2g25520`	Probable sugar phosphate/phosphate translocator At2g25520.	No verified direct reference in this release
`At4g32390`	Probable sugar phosphate/phosphate translocator At4g32390.	No verified direct reference in this release
`At5g11230`	Probable sugar phosphate/phosphate translocator At5g11230.	No verified direct reference in this release
`At1g48230`	Probable sugar phosphate/phosphate translocator At1g48230.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018255 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015780 nucleotide-sugar transmembrane transport Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0005768 endosome Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0015297 antiporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G25520

ath:AT3G17430

ath:AT4G32390

ath:AT5G11230

ath:AT5G25400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.684

Rank 1 · TkA08G018150 · TK1151

Endoplasmic reticulum0.251

Rank 2 · TkA08G018150 · TK1151

Cytoplasm0.113

Rank 3 · TkA08G018150 · TK1151

Cell membrane0.047

Rank 4 · TkA08G018150 · TK1151

Lysosome / Vacuole0.029

Rank 5 · TkA08G018150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03151TPT20-291 aa

PF00892EamA22-29 aa

PF08449UAA60-292 aa

PF00892EamA67-140 aa

PF11019DUF260880-134 aa

PF00892EamA151-288 aa

PF11019DUF2608281-313 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G018150	`PF03151`	TPT	20	291	7e-20	72.3
TkA08G018150	`PF00892`	EamA	22	29	0.0046	18.0
TkA08G018150	`PF08449`	UAA	60	292	0.0091	15.9
TkA08G018150	`PF00892`	EamA	67	140	0.0046	18.0
TkA08G018150	`PF11019`	DUF2608	80	134	0.013	15.7
TkA08G018150	`PF00892`	EamA	151	288	0.0046	18.0
TkA08G018150	`PF11019`	DUF2608	281	313	0.013	15.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q3E6T0`	Arabidopsis thaliana	sp\|Q3E6T0\|PT525_ARATH Probable sugar phosphate/phosphate translocator At5g25400	82.300%	Swiss-Prot	High
`Q9SKJ7`	Arabidopsis thaliana	sp\|Q9SKJ7\|PT225_ARATH Probable sugar phosphate/phosphate translocator At2g25520	81.700%	Swiss-Prot	High
`Q9SUV2`	Arabidopsis thaliana	sp\|Q9SUV2\|PT432_ARATH Probable sugar phosphate/phosphate translocator At4g32390	79.100%	Swiss-Prot	High
`Q9LFN3`	Arabidopsis thaliana	sp\|Q9LFN3\|PT511_ARATH Probable sugar phosphate/phosphate translocator At5g11230	80.100%	Swiss-Prot	High
`Q9LNH5`	Arabidopsis thaliana	sp\|Q9LNH5\|PT148_ARATH Probable sugar phosphate/phosphate translocator At1g48230	46.100%	Swiss-Prot	Medium

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