TkA07G443080 | RubberDandelionOmics

Gene overview

TkA07G443080

Reference: TK1151 Chr: Chr07 Coordinates: 112309957-112311439 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1235 bp · TkA07G443080|TK1151|cDNA

CTCTCTCTCTCTTGCTATCTCTTGTCTGATTCGCTCTTTAAGATTTCAAAAAGTTATATGCACAGATAAACAAAGGGACGAAAGCCAAAAGGAAAACGCGTATCAATTGGTTAAAGATCCGCATCATCGTCGTCGTCATTCTCTGAAACTGAAGATATCGATATTATGTGCATTGATTTCAATTTTGATTTGCCTTTGATAGCAACAATTCACCATTTCTCATGATCCTATTGCTCTGAAATCTGAACTATTCTTCGCGC...

CDS

Download CDS FASTA

885 bp · TkA07G443080|TK1151|CDS

ATGGGGAAAACAGGAAGAGATTGGACTCAGATCTACGCCATCTACGGCATGGACGATTGGCAAACACCGGTGTTCCTCCTACTCCACGCGATCTTCTTCTCAGTCTCATCAGTCCTCTTTCTAATTTACTTTGACTGGATCTGCTCTTCCTTCGAGTCGATTCTCCCCGCCGTTTTTTCCACCGGTTTCGCTAGATTCTCCGCCGGATTCACCGGCTCCGTCACAGCTCTCTCCGGCGTATGCCTTTTTTACGCAGCCGG...

Protein

Download Protein FASTA

294 aa · TkA07G443080|TK1151|PROTEIN

MGKTGRDWTQIYAIYGMDDWQTPVFLLLHAIFFSVSSVLFLIYFDWICSSFESILPAVFSTGFARFSAGFTGSVTALSGVCLFYAAGNIFYSSVALRWDMAQRMVGAVHDWSTVKTALDVGCGRGILLNTVAMQLKKEGSSGRVVGLDRKDTTLSTLRTAGMEGVQEYVTCRAGDARRLPFPDNYFDVVVSAGFLHTVGKEFGQKTAAAAAERMRVLGEVVRVLKGGEIGVIWDLVHVPEYVQRLQELKMEDIRVSERVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G443080`
TK1151 ID	TkA07G443080
OH-1004 ID	LXL04_030984
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 96.939 / OH-1004 59.499 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA07G443080`
Location	Chr07:112309957-112311439 (+)
Description	Similar to menG: Demethylmenaquinone methyltransferase (Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_030984` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009234 menaquinone biosynthetic process Biological Process GO:0032259 methylation Biological Process GO:0046685 response to arsenic-containing substance Biological Process GO:0008168 methyltransferase activity Molecular Function GO:0030791 arsenite methyltransferase activity Molecular Function GO:0043770 demethylmenaquinone methyltransferase activity Molecular Function
KEGG gene cross-reference	ljo:LJ_0053 lmh:LMHCC_0625 lmo:lmo1931 lwe:lwe1957 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.343

Rank 1 · TkA07G443080 · TK1151

Mitochondrion0.288

Rank 2 · TkA07G443080 · TK1151

Cytoplasm0.149

Rank 3 · TkA07G443080 · TK1151

Nucleus0.122

Rank 4 · TkA07G443080 · TK1151

Plastid0.080

Rank 5 · TkA07G443080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03141Methyltransf_2983-190 aa

PF13679Methyltransf_32103-156 aa

PF01135PCMT111-155 aa

PF01209Ubie_methyltran113-231 aa

PF05175MTS113-223 aa

PF01728FtsJ113-194 aa

PF13489Methyltransf_23114-198 aa

PF02353CMAS115-214 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G443080	`PF03141`	Methyltransf_29	83	190	0.011	15.0
TkA07G443080	`PF13679`	Methyltransf_32	103	156	0.0041	17.8
TkA07G443080	`PF01135`	PCMT	111	155	0.035	14.6
TkA07G443080	`PF01209`	Ubie_methyltran	113	231	6e-06	26.5
TkA07G443080	`PF05175`	MTS	113	223	0.0047	17.2
TkA07G443080	`PF01728`	FtsJ	113	194	0.099	13.3
TkA07G443080	`PF13489`	Methyltransf_23	114	198	0.016	15.7
TkA07G443080	`PF02353`	CMAS	115	214	0.25	11.3
TkA07G443080	`PF13847`	Methyltransf_31	116	246	3.4e-12	47.1
TkA07G443080	`PF05185`	PRMT5	117	191	0.021	15.4
TkA07G443080	`PF07021`	MetW	117	193	0.067	13.5
TkA07G443080	`PF08241`	Methyltransf_11	118	227	4e-15	56.9
TkA07G443080	`PF13649`	Methyltransf_25	118	209	4.1e-13	50.6
TkA07G443080	`PF08242`	Methyltransf_12	118	211	3.1e-06	28.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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