TkA07G440110 | RubberDandelionOmics

Gene overview

TkA07G440110

Reference: TK1151 Chr: Chr07 Coordinates: 111492489-111494435 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

806 bp · TkA07G440110|TK1151|cDNA

ATATGTATGTGTGTAGTGTTAATGTTAGAGTATATGGGCTTTAGCCCATTAGGTTTGTGATAGCTAGGTTTACCTAGCTATATATATGTATGTGTGTAGTGTTAATGAGGCAAGCAAATATATCAAAGCATTCCATCTTATAACATGGTATCAGAGCACCGGGTTCAAAACCTACGTTGGTCACCATCTCTTCTTCTGATGATCACTCGGCAGCGTCACCGGCCCATGCCGTCTCCGGTCACCTCCTATCCTTTTCAGGC...

CDS

Download CDS FASTA

366 bp · TkA07G440110|TK1151|CDS

ATGGTATCAGAGCACCGGGTTCAAAACCTACGTTGGTCACCATCTCTTCTTCTGATGATCACTCGGCAGCGTCACCGGCCCATGCCGTCTCCGGTCACCTCCTATCCTTTTCAGGCCCCGACTTTGCCGGATCTTCCTTTCTTGTCGATGCCGCTGCTGCCACTGTTGCCTCTTGTTCCAGTTGTCGGCACCTTCCGCGACAATATTCTTGTTTCTCTTCTTCTACGCGCGCAGGTCAGACTCCTGCTTCTCTTCTCAGA...

Protein

Download Protein FASTA

121 aa · TkA07G440110|TK1151|PROTEIN

MVSEHRVQNLRWSPSLLLMITRQRHRPMPSPVTSYPFQAPTLPDLPFLSMPLLPLLPLVPVVGTFRDNILVSLLLRAQVRLLLLFSECRLHRSLFFLMLPRLKCRRLQFHQPPTIPLCMQS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G440110`
TK1151 ID	TkA07G440110
OH-1004 ID	LXL04_030929
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	98.200
Protein coverage (%)	TK1151 46.281 / OH-1004 9.380 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA07G440110`
Location	Chr07:111492489-111494435 (+)
Description	Similar to ABCI8: UPF0051 protein ABCI8, chloroplastic
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_030929` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006879 intracellular iron ion homeostasis Biological Process GO:0016226 iron-sulfur cluster assembly Biological Process GO:2000030 regulation of response to red or far red light Biological Process GO:0009507 chloroplast Cellular Component GO:0009570 chloroplast stroma Cellular Component GO:1990229 iron-sulfur cluster assembly complex Cellular Component GO:0042626 ATPase-coupled transmembrane transporter activity Molecular Function
KEGG gene cross-reference	ath:AT4G04770 syn:slr0074 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.413

Rank 1 · TkA07G440110 · TK1151

Cytoplasm0.346

Rank 2 · TkA07G440110 · TK1151

Mitochondrion0.212

Rank 3 · TkA07G440110 · TK1151

Cell membrane0.057

Rank 4 · TkA07G440110 · TK1151

Endoplasmic reticulum0.057

Rank 5 · TkA07G440110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13906AA_permease_C37-50 aa

PF13906AA_permease_C54-71 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G440110	`PF13906`	AA_permease_C	37	50	0.92	10.4
TkA07G440110	`PF13906`	AA_permease_C	54	71	0.92	10.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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