TkA07G423430 | RubberDandelionOmics

Gene overview

TkA07G423430

Reference: TK1151 Chr: Chr07 Coordinates: 107044250-107047548 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2477 bp · TkA07G423430|TK1151|cDNA

CCAAAACTCACCAAGACCCATTTCGCATTTCAAAAAATCCCAGTCTGAAACCCAAACAGTACCATAATCTCCGATGGGTGTTACCAAGGAAAATTGCCGGAACGAGCTCCGAGCTGCAATCCGTCAACTTACAGATCGCTGCCTGTACTCCGCCGCCAAATGGGCTGCGGAACAATTAGTTGGCATTGAGCAAGATCCGGCAAAGTACCCGCCTTCGCACACTCGATTACAGCGAGACTGTTCCAGCATTCGCCGCCGAT...

CDS

Download CDS FASTA

1407 bp · TkA07G423430|TK1151|CDS

ATGCTACGCTCTATATCTGGTGTTCGATTAAATGCAAAAACCACCAACTCACCCCTTAAATCCTTCCAGGCCGGAGAAAAACGAAAAGAAGAAGAAACAATCGAGCTCGAAGGTCCACTGGGCAAAAGCGACGCCATCAACACCGAACTAACCTCAATCGAACGCGACCTCTCCACCCTCCGCAAAAACAACACAATCGACCCCTTCTCCCTCTACCTCTACGGCCTAGTCCTCAAACAAAAAGGCGACCACACCCTAGC...

Protein

Download Protein FASTA

468 aa · TkA07G423430|TK1151|PROTEIN

MLRSISGVRLNAKTTNSPLKSFQAGEKRKEEETIELEGPLGKSDAINTELTSIERDLSTLRKNNTIDPFSLYLYGLVLKQKGDHTLAKTVLTESVNTYPWNWSAWEQLQSLSPTIETLNSLKLNNHYMKDFFLASSYHELRLHTQSLSKYQSLQSTFTSSTYIKAQIAKAQYSLREFEQVESIFEELLRIDPYRIDDMDMYSNVLYAKECFSGLSYLAHQVFLTDKYRPESCCIIGNYYSLKGLHEKSVTYFKRALKLNK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G423430`
TK1151 ID	TkA07G423430
OH-1004 ID	LXL04_030689
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.100
Protein coverage (%)	TK1151 94.444 / OH-1004 52.494 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G423430

Location Chr07:107044250-107047548 (-)

Description Similar to APC8: Anaphase-promoting complex subunit 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g48150`	Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030689 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000278 mitotic cell cycle Biological Process

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0007080 mitotic metaphase chromosome alignment Biological Process

GO:0007091 metaphase/anaphase transition of mitotic cell cycle Biological Process

GO:0007096 regulation of exit from mitosis Biological Process

GO:0007346 regulation of mitotic cell cycle Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0030071 regulation of mitotic metaphase/anaphase transition Biological Process

GO:0031145 anaphase-promoting complex-dependent catabolic process Biological Process

GO:0031347 regulation of defense response Biological Process

GO:0045842 positive regulation of mitotic metaphase/anaphase transition Biological Process

GO:0051301 cell division Biological Process

KEGG gene cross-reference

ath:AT3G48150

bta:512651

ddi:DDB_G0272775

hsa:8697

mmu:52563

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.601

Rank 1 · TkA07G423430 · TK1151

Cytoplasm0.462

Rank 2 · TkA07G423430 · TK1151

Golgi apparatus0.050

Rank 3 · TkA07G423430 · TK1151

Mitochondrion0.042

Rank 4 · TkA07G423430 · TK1151

Peroxisome0.039

Rank 5 · TkA07G423430 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04049ANAPC822-168 aa

PF13429TPR_1535-104 aa

PF22890TPR_EMC248-109 aa

PF25063ARM_TT21_C57-108 aa

PF13432TPR_1658-87 aa

PF21033RMD1-358-96 aa

PF13431TPR_1766-87 aa

PF12895ANAPC367-96 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G423430	`PF04049`	ANAPC8	22	168	1.4e-36	127.1
TkA07G423430	`PF13429`	TPR_15	35	104	5.4e-05	23.5
TkA07G423430	`PF22890`	TPR_EMC2	48	109	0.46	11.4
TkA07G423430	`PF25063`	ARM_TT21_C	57	108	8.2e-05	23.3
TkA07G423430	`PF13432`	TPR_16	58	87	2.4e-11	44.6
TkA07G423430	`PF21033`	RMD1-3	58	96	3.6e-07	30.3
TkA07G423430	`PF13431`	TPR_17	66	87	5.1e-16	58.2
TkA07G423430	`PF12895`	ANAPC3	67	96	1.5e-06	29.2
TkA07G423430	`PF07719`	TPR_2	69	98	7.4e-28	95.0
TkA07G423430	`PF13181`	TPR_8	70	96	2.8e-26	90.1
TkA07G423430	`PF13424`	TPR_12	70	96	7.4e-15	55.6
TkA07G423430	`PF13174`	TPR_6	70	99	9.8e-09	36.0
TkA07G423430	`PF13428`	TPR_14	71	108	4.7e-22	76.9
TkA07G423430	`PF09295`	ChAPs	72	111	0.00016	21.5
TkA07G423430	`PF00515`	TPR_1	75	87	1e-27	95.5
TkA07G423430	`PF29407`	CFAP70_TPR_C	78	101	2.3e-10	41.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9STS3`	Arabidopsis thaliana	sp\|Q9STS3\|CDC23_ARATH Anaphase-promoting complex subunit 8	74.900%	Swiss-Prot	High

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