Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1070 bp · TkA07G419850|TK1151|cDNA
TTTCTCTCATCATTTCCCTCAAAATCTCCTAAATCATCAAACCCAAATCACAGCCACAATTTCGCCACTTCACTCAATATTACAAAAGGACACACCACATCACACATTTTCAACAAATCAAACCACCACCACTTCTCACTTCGCCGGAAAACATGGCCGCCGTCACACAAGCTCCGGTCGCAGTCTTCCGACCATGCGCCTCGCGCACCAGGTTCCTAACTGGATCATCAGGGAAATTAAACAGAGATCTATCACTCAAA...
822 bp · TkA07G419850|TK1151|CDS
ATGGCCGCCGTCACACAAGCTCCGGTCGCAGTCTTCCGACCATGCGCCTCGCGCACCAGGTTCCTAACTGGATCATCAGGGAAATTAAACAGAGATCTATCACTCAAACCATCAAATACCTTCGCATCTTCTTCGTTCAAGATCGAAGCCAAAAAAGGCGAATGGCTACCGGGTTTAGCCTCACCTGGTTACCTCAACGGAAGTCTTCCAGGTGACAACGGGTTCGACCCGTTGGGTCTAGCCGAGGACCCGGAGAACTT...
Protein
Download Protein FASTA273 aa · TkA07G419850|TK1151|PROTEIN
MAAVTQAPVAVFRPCASRTRFLTGSSGKLNRDLSLKPSNTFASSSFKIEAKKGEWLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTSIGVLNVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPNEVGYPGSVNQDPIFKSYSLPPNEVGYPGGIFNPLNFAPTAEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLSQHLSD...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA07G419850 |
|---|---|
| TK1151 ID | TkA07G419850 |
| OH-1004 ID | LXL04_030629 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 90.300 |
| Protein coverage (%) | TK1151 94.505 / OH-1004 50.535Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA07G419850 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:106043710-106049183 (+) | |||||||||
| Description | Similar to lhcA-P4: Chlorophyll a-b binding protein P4, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009409 response to cold Biological Process GO:0009416 response to light stimulus Biological Process GO:0009644 response to high light intensity Biological Process GO:0009645 response to low light intensity stimulus Biological Process GO:0009765 photosynthesis, light harvesting Biological Process GO:0009768 photosynthesis, light harvesting in photosystem I Biological Process GO:0005829 cytosol Cellular Component GO:0009507 chloroplast Cellular Component GO:0009522 photosystem I Cellular Component GO:0009523 photosystem II Cellular Component GO:0009534 chloroplast thylakoid Cellular Component GO:0009535 chloroplast thylakoid membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G47470 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00504Chloroa_b-bind62-243 aaPF31213HliA90-120 aaPF19927DUF6390170-189 aaPF19927DUF6390192-208 aaPF31213HliA225-249 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA07G419850 | PF00504 | Chloroa_b-bind | 62 | 243 | 5.3e-47 | 161.0 |
| TkA07G419850 | PF31213 | HliA | 90 | 120 | 2.9e-10 | 40.6 |
| TkA07G419850 | PF19927 | DUF6390 | 170 | 189 | 0.1 | 12.8 |
| TkA07G419850 | PF19927 | DUF6390 | 192 | 208 | 0.1 | 12.8 |
| TkA07G419850 | PF31213 | HliA | 225 | 249 | 2.9e-10 | 40.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.