LXL04_030629 | RubberDandelionOmics

Gene overview

LXL04_030629

Reference: OH-1004 Chr: Chr06 Coordinates: 119885363-119890471 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1404 bp · LXL04_030629|LXL04_030629|OH1004|cDNA

atgGCCGCCGTCACACAAGCTCCGGTCGCAGTCTTCCGACCATGCGCCTCGCGCACCAGGTTCCTAACTGGATCATCAGGGAAATTAAACAGAGATCTATCACTCAAACCATCAAATACCTTCGCATCTTCTTCGTTCAAGATCGAAGCCAAAAAAGGCGAATGGCTACCGGGTTTAGCCTCACCTGGTTACCTCAACGGAAGTCTTCCAGGTGACAACGGGTTCGACCCGTTGGGTCTAGCCGAGGACCCGGAGAACTT...

CDS

Download CDS FASTA

1404 bp · LXL04_030629|LXL04_030629|OH1004|CDS

ATGGCCGCCGTCACACAAGCTCCGGTCGCAGTCTTCCGACCATGCGCCTCGCGCACCAGGTTCCTAACTGGATCATCAGGGAAATTAAACAGAGATCTATCACTCAAACCATCAAATACCTTCGCATCTTCTTCGTTCAAGATCGAAGCCAAAAAAGGCGAATGGCTACCGGGTTTAGCCTCACCTGGTTACCTCAACGGAAGTCTTCCAGGTGACAACGGGTTCGACCCGTTGGGTCTAGCCGAGGACCCGGAGAACTT...

Protein

Download Protein FASTA

467 aa · LXL04_030629|LXL04_030629|OH1004|PROTEIN

MAAVTQAPVAVFRPCASRTRFLTGSSGKLNRDLSLKPSNTFASSSFKIEAKKGEWLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTSIGVLNVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPNEVGYPGGIFNPLNFAPTAEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLFLTGSSGKLNRDLSLKPANTFASS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030629`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030629

Location Chr06:119885363-119890471 (+)

Description Similar to lhcA-P4: Chlorophyll a-b binding protein P4, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g47470`	The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_030629 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009644 response to high light intensity Biological Process

GO:0009645 response to low light intensity stimulus Biological Process

GO:0009765 photosynthesis, light harvesting Biological Process

GO:0009768 photosynthesis, light harvesting in photosystem I Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009522 photosystem I Cellular Component

GO:0009523 photosystem II Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

KEGG gene cross-reference

ath:AT3G47470

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.978

Rank 1 · LXL04_030629 · OH-1004

Mitochondrion0.034

Rank 2 · LXL04_030629 · OH-1004

Cytoplasm0.015

Rank 3 · LXL04_030629 · OH-1004

Peroxisome0.008

Rank 4 · LXL04_030629 · OH-1004

Nucleus0.007

Rank 5 · LXL04_030629 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00504.29Chloroa_b-bind62-221 aa

PF31213.1HliA90-120 aa

PF00504.29Chloroa_b-bind278-437 aa

PF31213.1HliA301-336 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030629	`PF00504.29`	Chloroa_b-bind	62	221	1.5e-96	322.1
LXL04_030629	`PF31213.1`	HliA	90	120	1.3e-21	77.0
LXL04_030629	`PF00504.29`	Chloroa_b-bind	278	437	1.5e-96	322.1
LXL04_030629	`PF31213.1`	HliA	301	336	1.3e-21	77.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P27521`	Arabidopsis thaliana	Chlorophyll a-b binding protein 4, chloroplastic	84.454%	Swiss-Prot	moderate database homology

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