Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1407 bp · TkA07G413350|TK1151|cDNA
AAAAAAACAAAATATATTTAATTACTTCCTGTATTCTTTCCGTTACCAATATGAACAAAACTTTTACCCAAAAGGATCAAAATTCAGTTGGGAATTAGGGTTTGACCGATTTGTTTCCAATCCCTCGAAGCTCAACAATCAAGTACTGTGAAGTCTAGCGAGCAATCGCGAGGGGTTTGTTTGCGTAGATCATCACCACTATGCAGAAGCTATTCGCCCTCAAACTAATTACCAGAAACCCAAGAAAAATTGCTTCACAA...
987 bp · TkA07G413350|TK1151|CDS
ATGCAGAAGCTATTCGCCCTCAAACTAATTACCAGAAACCCAAGAAAAATTGCTTCACAAACCTTACGATCAAACCCACTTCCTCTCCACCGGACCACCGATGTCCCCCCACACCACCACCACCACCACCACCACCACCACCGTGGTTTCTCTCATTATACCACTTCTTCACAGCCATTGCAGCAAGCACCCACCAACTGTTTGACGAAAGTCCTTTCAAACCAAGCTCTTCCAAAGTGGCTTTTACCGAATGCGCTTTT...
Protein
Download Protein FASTA328 aa · TkA07G413350|TK1151|PROTEIN
MQKLFALKLITRNPRKIASQTLRSNPLPLHRTTDVPPHHHHHHHHHHRGFSHYTTSSQPLQQAPTNCLTKVLSNQALPKWLLPNALLKMKYPRLMDYPQQLFLRKKLLKQWKSENRRMFTTDGVVIGLIVTNVAVFLLWRVADRKFMMENFMIQLDNFKSGRFHTMITSAFSHIEVGHIFSNMIGLYFFGKSIGNFFGPAFLLKLYLAGAFVGSAFFLVHHAFLAPSSKDRRLFEPDPSKVPGLGASGAVNAIMLLDIFL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA07G413350 |
|---|---|
| TK1151 ID | TkA07G413350 |
| OH-1004 ID | LXL04_024322 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 81.900 |
| Protein coverage (%) | TK1151 25.305 / OH-1004 54.967Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA07G413350 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:104420468-104423712 (-) | |||||||||
| Description | Similar to RBL12: RHOMBOID-like protein 12, mitochondrial | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0010821 regulation of mitochondrion organization Biological Process GO:0016485 protein processing Biological Process GO:0005739 mitochondrion Cellular Component GO:0005886 plasma membrane Cellular Component GO:0031966 mitochondrial membrane Cellular Component GO:0031969 chloroplast membrane Cellular Component GO:0004252 serine-type endopeptidase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G18600 ath:AT1G74130 ath:AT1G74140 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF17304OM14_C104-136 aaPF08551DUF1751130-266 aaPF01694Rhomboid161-314 aaPF17304OM14_C229-263 aaPF17304OM14_C288-312 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA07G413350 | PF17304 | OM14_C | 104 | 136 | 0.0061 | 17.8 |
| TkA07G413350 | PF08551 | DUF1751 | 130 | 266 | 0.015 | 15.4 |
| TkA07G413350 | PF01694 | Rhomboid | 161 | 314 | 3.1e-23 | 83.3 |
| TkA07G413350 | PF17304 | OM14_C | 229 | 263 | 0.0061 | 17.8 |
| TkA07G413350 | PF17304 | OM14_C | 288 | 312 | 0.0061 | 17.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.