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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G410060
Reference: TK1151 Chr: Chr07 Coordinates: 103545921-103551226 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3348 bp · TkA07G410060|TK1151|cDNA

TTGAAACACTTTTTATATTTTGCTACAAAAATATTATCCAGGTGGCAATCGCATCACAAGCGCGCGAGTCTCTCCAAACGATCGCAACTTCTCTTTCCCGCCCAAACCCCTCCAATTTCTTCTAAACCCTAACCTCAAAATTCGCGTTGTAACGATTCTCTACACCCTCAAAAACCCTAACTTACTTTTTCTCACCTGTTATCGTTTTCCTTTATCCGCGAAGAATCGAGCATGGATGGAGATTTGCAGGACCACAACAA...

CDS

Download CDS FASTA

2796 bp · TkA07G410060|TK1151|CDS

ATGGATGGAGATTTGCAGGACCACAACAAACTTCCTGAGCTGAAATTAGATGCTAAACAAGCTCAAGGGTTTCTCACCTTCTTTAAGAAATTACCTAACGATGAAAAGGCCGTTCGCTTTTTCGATCGACGGGATTATTTCACAGCTCATGGCGAAAATGCTTCTTTCATCGCAAAAACATATTACCACACAACAACCGCCCTAAGACAAATCGGCAATGGATCTGATGCAGTATCCAGTGTATCTGTAAGTAAAAACAT...

Protein

Download Protein FASTA

931 aa · TkA07G410060|TK1151|PROTEIN

MDGDLQDHNKLPELKLDAKQAQGFLTFFKKLPNDEKAVRFFDRRDYFTAHGENASFIAKTYYHTTTALRQIGNGSDAVSSVSVSKNMFETIVRDLLLERTDHSLELYEGSGSNWRLTKRGTPGNLGSFEDILFANNDMQDSPVIVAILPNFRENGCTIGLGYVDLSKRILGITEFLDDSHFTNVESCLVSLGCKECVLPSETSKSNECKPLYDVMSKCGVMVTERKKTEFKSRDLGQDLGRLVKGSNEPVRDLVSSFEFA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G410060
TK1151 IDTkA07G410060
OH-1004 IDLXL04_030535
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G410060
LocationChr07:103545921-103551226 (-)
DescriptionSimilar to MSH2: DNA mismatch repair protein MSH2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g18524 Component of the post-replicative DNA mismatch repair system (MMR).
Arabidopsis MutS homologs-AtMSH2, AtMSH3, AtMSH6, and a novel AtMSH7-form three distinct protein heterodimers with different specificities for mismatched DNA.2000 · DOI: 10.1105/tpc.12.6.991
Reduction of stability of arabidopsis genomic and transgenic DNA-repeat sequences (microsatellites) by inactivation of AtMSH2 mismatch-repair function.2003 · DOI: 10.1104/pp.103.023952
Dissimilar mispair-recognition spectra of Arabidopsis DNA-mismatch-repair proteins MSH2*MSH6 (MutSalpha) and MSH2*MSH7 (MutSgamma).2003 · DOI: 10.1093/nar/gkg780
The role of AtMSH2 in homologous recombination in Arabidopsis thaliana.2006 · DOI: 10.1038/sj.embor.7400577
The impact of sequence divergence and DNA mismatch repair on homeologous recombination in Arabidopsis.2006 · DOI: 10.1111/j.1365-313x.2006.02657.x
Impact of the loss of AtMSH2 on double-strand break-induced recombination between highly diverged homeologous sequences in Arabidopsis thaliana germinal tissues.2007 · DOI: 10.1007/s11103-006-9128-5
Regulation of plant MSH2 and MSH6 genes in the UV-B-induced DNA damage response.2011 · DOI: 10.1093/jxb/err001

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030535 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006119 oxidative phosphorylation Biological Process
GO:0006281 DNA repair Biological Process
GO:0006290 pyrimidine dimer repair Biological Process
GO:0006298 mismatch repair Biological Process
GO:0006301 DNA damage tolerance Biological Process
GO:0006302 double-strand break repair Biological Process
GO:0006312 mitotic recombination Biological Process
GO:0006974 DNA damage response Biological Process
GO:0007281 germ cell development Biological Process
GO:0008340 determination of adult lifespan Biological Process
GO:0010165 response to X-ray Biological Process
GO:0010224 response to UV-B Biological Process
KEGG gene cross-reference
ath:AT3G18524
bta:533115
mmu:17685
zma:100279876
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.777
Rank 1 · TkA07G410060 · TK1151
Cytoplasm0.295
Rank 2 · TkA07G410060 · TK1151
Mitochondrion0.058
Rank 3 · TkA07G410060 · TK1151
Cell membrane0.032
Rank 4 · TkA07G410060 · TK1151
Endoplasmic reticulum0.019
Rank 5 · TkA07G410060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01624MutS_I23-128 aa
PF12968DUF385629-89 aa
PF00488MutS_V52-93 aa
PF05188MutS_II143-283 aa
PF05192MutS_III299-606 aa
PF02895H-kinase_dim362-390 aa
PF09763Sec3_CC459-495 aa
PF05190MutS_IV468-565 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G410060PF01624MutS_I231288.5e-1762.1
TkA07G410060PF12968DUF385629890.05414.2
TkA07G410060PF00488MutS_V52937e-81271.4
TkA07G410060PF05188MutS_II1432838.2e-1659.4
TkA07G410060PF05192MutS_III2996066.6e-34118.7
TkA07G410060PF02895H-kinase_dim3623900.7810.9
TkA07G410060PF09763Sec3_CC4594952.58.7
TkA07G410060PF05190MutS_IV4685653.6e-2072.8
TkA07G410060PF02895H-kinase_dim4694910.7810.9
TkA07G410060PF05188MutS_II5395718.2e-1659.4
TkA07G410060PF09763Sec3_CC5626022.58.7
TkA07G410060PF00488MutS_V6628527e-81271.4
TkA07G410060PF02895H-kinase_dim8869200.7810.9
TkA07G410060PF05192MutS_III8899086.6e-34118.7
TkA07G410060PF05190MutS_IV9029193.6e-2072.8
TkA07G410060PF09763Sec3_CC9029292.58.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O24617Arabidopsis thalianasp|O24617|MSH2_ARATH DNA mismatch repair protein MSH274.000%Swiss-ProtHigh

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