TkA07G409890 | RubberDandelionOmics

Gene overview

TkA07G409890

Reference: TK1151 Chr: Chr07 Coordinates: 103486915-103488795 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1463 bp · TkA07G409890|TK1151|cDNA

CGTACACCACCATCGATACTGGACAATTACGTATGAAAGCGAAAAATAGCTACCGTCGAAACTTGAAACAAATTGCCTGTTCACTTTTCCTTTCCCTTTTCCAACTCCACTTTTCTAGGTTTTTTAACATAGATTCCTTGAATCACTCATCAAAGTCTTTCTTTCTTATGGATTCCTTCAGATGTTCGAGCTTCACAAAGACTTGATTTTTTCGTGAATCAGCAGTTGTAGTGGATCCAGCTTTGAGTAAGAACTCCATG...

CDS

Download CDS FASTA

786 bp · TkA07G409890|TK1151|CDS

ATGGACGCCAATCGGCATCTCGAAAATGCGAGGCAAAAGCAACATCACGGCCAGTGGTTAATGCAACAGCAACCGTCAATGAAGCAAATAATGTCGATCATGGCCGAAAGAGACGCAGCCATACAAGAACGAAACCTCGCATTATCAGAAAAGAAAACCGCCTTAGCCGGGCGAGACATGGCCCTTCTCCAACGAGATTCAGCAATCGCAGAACGAAACAGCGCCATCATGGAACGCGACAACGCCATCGCAACTCTCCA...

Protein

Download Protein FASTA

261 aa · TkA07G409890|TK1151|PROTEIN

MDANRHLENARQKQHHGQWLMQQQPSMKQIMSIMAERDAAIQERNLALSEKKTALAGRDMALLQRDSAIAERNSAIMERDNAIATLQYRENSINTPTHHRQHFQQQSGADLISPAAPNPEKSRKPKRTKEVKSITTRKTLRSTKKVKVECDDLNKAMAMYEDWNSGGVPIPVCSCTGVFRQCYKWGNGGWQSSCCTTTMSMYPLPSIPNRRHARVGGRKMSGSVFNKLVSRLADEGCDLLNPVDLKEHWAKHGTNRYITI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G409890`
TK1151 ID	TkA07G409890
OH-1004 ID	LXL04_030529
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G409890

Location Chr07:103486915-103488795 (+)

Description Similar to BPC6: Protein BASIC PENTACYSTEINE6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g42520`	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.	No verified direct reference in this release
`At4g38910`	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.	No verified direct reference in this release
`At2g21240`	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.	No verified direct reference in this release
`At2g35550`	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0130600`	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030529 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009723 response to ethylene Biological Process

GO:0050793 regulation of developmental process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT2G21240

ath:AT2G35550

ath:AT4G38910

ath:AT5G42520

dosa:Os06g0130600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.928

Rank 1 · TkA07G409890 · TK1151

Cytoplasm0.143

Rank 2 · TkA07G409890 · TK1151

Cell membrane0.028

Rank 3 · TkA07G409890 · TK1151

Mitochondrion0.018

Rank 4 · TkA07G409890 · TK1151

Endoplasmic reticulum0.015

Rank 5 · TkA07G409890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06217GAGA_bind1-261 aa

PF27936PROSER35-133 aa

PF10186ATG1418-113 aa

PF03235GmrSD_N85-169 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G409890	`PF06217`	GAGA_bind	1	261	3.5e-88	297.3
TkA07G409890	`PF27936`	PROSER3	5	133	0.054	13.7
TkA07G409890	`PF10186`	ATG14	18	113	1.2	8.8
TkA07G409890	`PF03235`	GmrSD_N	85	169	0.15	12.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8L999`	Arabidopsis thaliana	sp\|Q8L999\|BPC6_ARATH Protein BASIC PENTACYSTEINE6	54.500%	Swiss-Prot	High
`F4JUI3`	Arabidopsis thaliana	sp\|F4JUI3\|BPC5_ARATH Protein BASIC PENTACYSTEINE5	55.400%	Swiss-Prot	High
`Q8S8C6`	Arabidopsis thaliana	sp\|Q8S8C6\|BPC4_ARATH Protein BASIC PENTACYSTEINE4	56.400%	Swiss-Prot	High
`O82286`	Arabidopsis thaliana	sp\|O82286\|BPC7_ARATH Protein BASIC PENTACYSTEINE7	50.000%	Swiss-Prot	Medium
`Q5VSA8`	Oryza sativa subsp. japonica	sp\|Q5VSA8\|BBRD_ORYSJ Barley B recombinant-like protein D	62.600%	Swiss-Prot	Low

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