LXL04_030529 | RubberDandelionOmics

Gene overview

LXL04_030529

Reference: OH-1004 Chr: Chr06 Coordinates: 118160771-118161643 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

786 bp · LXL04_030529|LXL04_030529|OH1004|cDNA

ATGGACGCCAATCGGCATCTCGAAAATGCGAGGCAAAAGCAACATCACGGCCAGTGGTTAATGCAACAGCAACCGTCAATGAAGCAAATAATGTCGATCATGGCCGAAAGAGACGCAGCCATACAAGAACGAAACCTCGCATTATCAGAAAAGAAAACCGCCTTAGCCGGGCGAGACATGGCCCTTCTCCAACGAGATTCAGCAATCGCAGAACGAAACAGCGCCATCATGGAACGCGACAACGCCATCGCAACTCTCCA...

CDS

Download CDS FASTA

786 bp · LXL04_030529|LXL04_030529|OH1004|CDS

ATGGACGCCAATCGGCATCTCGAAAATGCGAGGCAAAAGCAACATCACGGCCAGTGGTTAATGCAACAGCAACCGTCAATGAAGCAAATAATGTCGATCATGGCCGAAAGAGACGCAGCCATACAAGAACGAAACCTCGCATTATCAGAAAAGAAAACCGCCTTAGCCGGGCGAGACATGGCCCTTCTCCAACGAGATTCAGCAATCGCAGAACGAAACAGCGCCATCATGGAACGCGACAACGCCATCGCAACTCTCCA...

Protein

Download Protein FASTA

261 aa · LXL04_030529|LXL04_030529|OH1004|PROTEIN

MDANRHLENARQKQHHGQWLMQQQPSMKQIMSIMAERDAAIQERNLALSEKKTALAGRDMALLQRDSAIAERNSAIMERDNAIATLQYRENSINTPTHHRQHFQQQSGADLISPAAPNPEKSRKPKRTKEVKSITTRKTLRSTKKVKVECDDLNKAMSMYEDWNSGGVPIPVCSCTGVFRQCYKWGNGGWQSACCTTTMSMYPLPSIPNRRHARVGGRKMSGSVFNKLVSRLADEGCDLLNPVDLKEHWAKHGTNRYITI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030529`
TK1151 ID	TkA07G409890
OH-1004 ID	LXL04_030529
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_030529

Location Chr06:118160771-118161643 (+)

Description Similar to BPC6: Protein BASIC PENTACYSTEINE6

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g42520`	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.	No verified direct reference in this release
`At4g38910`	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.	No verified direct reference in this release
`At2g21240`	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.	No verified direct reference in this release
`At2g35550`	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0130600`	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030529 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009723 response to ethylene Biological Process

GO:0050793 regulation of developmental process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT2G21240

ath:AT2G35550

ath:AT4G38910

ath:AT5G42520

dosa:Os06g0130600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.924

Rank 1 · LXL04_030529 · OH-1004

Cytoplasm0.151

Rank 2 · LXL04_030529 · OH-1004

Cell membrane0.027

Rank 3 · LXL04_030529 · OH-1004

Mitochondrion0.019

Rank 4 · LXL04_030529 · OH-1004

Endoplasmic reticulum0.015

Rank 5 · LXL04_030529 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06217.18GAGA_bind1-261 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030529	`PF06217.18`	GAGA_bind	1	261	2.8e-88	297.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L999`	Arabidopsis thaliana	Protein BASIC PENTACYSTEINE6	51.754%	Swiss-Prot	strong database homology
`F4JUI3`	Arabidopsis thaliana	Protein BASIC PENTACYSTEINE5	47.826%	Swiss-Prot	moderate database homology
`Q8S8C6`	Arabidopsis thaliana	Protein BASIC PENTACYSTEINE4	48.897%	Swiss-Prot	moderate database homology
`O82286`	Arabidopsis thaliana	Protein BASIC PENTACYSTEINE7	50.345%	Swiss-Prot	moderate database homology
`Q5VSA8`	Oryza sativa subsp. japonica	Barley B recombinant-like protein D	44.109%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card