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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G408380
Reference: TK1151 Chr: Chr07 Coordinates: 102716854-102718920 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1969 bp · TkA07G408380|TK1151|cDNA

ATTAGTTTTTCAGAAATTGGACTGTGCAATTTAACCAAGCCACCAGGCCCAACCCGAATGATTCGAAATAGGCCTCCAAACTTCAAACAATCACATTTCAGTTCATAGTTCACACTCCAGAGAACAAGGCCCAACCGTCGTCTCCTCCTTCGTCCCATCCCCCACCGCCGCACTCCGCCGCAGTCCTCGTCGTCGTTGTTAAACGGCTAATCAACCATCTACTCCGCCGCAGAGGAACACAACAACCTTTCATATCGAGA...

CDS

Download CDS FASTA

1401 bp · TkA07G408380|TK1151|CDS

ATGTTTCTTTTTGCAAGATTGATAGCTTCAAAAACAACCAAGGCCACATGCTCCAACCGCAGTGCTTTCACAACACTCCGAGCTGCCATGGGCGACCACCGTAGTAACAGTGGGGGTGCATTAGTAGGCAGCAGAGATGGAACAAACGACGATTATTTCGCCACAATTCATCACATCTCCAACATCGTCCGCCGTGACATCTACTTAGAAAGAACCCTAAACAAAATGTGCATTTCCCGCATCGTCAATTCCGAGCTTGT...

Protein

Download Protein FASTA

466 aa · TkA07G408380|TK1151|PROTEIN

MFLFARLIASKTTKATCSNRSAFTTLRAAMGDHRSNSGGALVGSRDGTNDDYFATIHHISNIVRRDIYLERTLNKMCISRIVNSELVYRVLRSCSNSGIESFRFFNWVRTQHPQYEPTTLEFEELLKILAKTRHWETMWKVAHQMKTQKLPISPSVVSFIIEHYGKNGLIDQAVELFNKSKNFNCTQTTEIYNSLLFALCEVKNFQGAYGLVRRMVRKGITPDKKTYSVLVNGWCTAGKMKEAQNFLEEMSQKGYNPPVR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G408380
TK1151 IDTkA07G408380
OH-1004 IDLXL04_030498
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 99.571 / OH-1004 96.266
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G408380
LocationChr07:102716854-102718920 (-)
DescriptionSimilar to At5g18390: Pentatricopeptide repeat-containing protein At5g18390, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g18390 Pentatricopeptide repeat-containing protein At5g18390, mitochondrial. No verified direct reference in this release
At1g07740 Pentatricopeptide repeat-containing protein At1g07740, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030498 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G74900
ath:AT5G18390
ath:AT5G65820
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.777
Rank 1 · TkA07G408380 · TK1151
Plastid0.124
Rank 2 · TkA07G408380 · TK1151
Nucleus0.058
Rank 3 · TkA07G408380 · TK1151
Cytoplasm0.025
Rank 4 · TkA07G408380 · TK1151
Cell membrane0.009
Rank 5 · TkA07G408380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00637Clathrin79-96 aa
PF26719TPR_Atp25_C83-149 aa
PF23276TPR_24102-179 aa
PF29070MSC6_N114-249 aa
PF13812PPR_3121-167 aa
PF13041PPR_2125-159 aa
PF01535PPR125-147 aa
PF13041PPR_2159-185 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G408380PF00637Clathrin79960.1312.7
TkA07G408380PF26719TPR_Atp25_C831490.000919.3
TkA07G408380PF23276TPR_241021796.5e-1555.9
TkA07G408380PF29070MSC6_N1142492.1e-1764.0
TkA07G408380PF13812PPR_31211678.4e-2484.2
TkA07G408380PF13041PPR_21251594.6e-48161.8
TkA07G408380PF01535PPR1251471.5e-36122.8
TkA07G408380PF13041PPR_21591854.6e-48161.8
TkA07G408380PF01535PPR1601851.5e-36122.8
TkA07G408380PF12854PPR_11601793.1e-35120.3
TkA07G408380PF13812PPR_31601968.4e-2484.2
TkA07G408380PF00637Clathrin1601870.1312.7
TkA07G408380PF00637Clathrin1601940.1312.7
TkA07G408380PF24760TPR_IF140_C1652150.000321.9
TkA07G408380PF17177PPR_long1702541.1e-1455.0
TkA07G408380PF12854PPR_11892163.1e-35120.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94JX6Arabidopsis thalianasp|Q94JX6|PP391_ARATH Pentatricopeptide repeat-containing protein At5g18390, mitochondrial56.400%Swiss-ProtLow
Q9LQQ1Arabidopsis thalianasp|Q9LQQ1|PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740, mitochondrial27.500%Swiss-ProtLow

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