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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G395940
Reference: TK1151 Chr: Chr07 Coordinates: 99464272-99467374 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2405 bp · TkA07G395940|TK1151|cDNA

CTGCTTTTAGCCCATTTTCCCAAATTTAGGTACGTAGCGTCACAGGTACGGACAACTGACATTTCTCACTGACTAAAGAGTGGTCTTCACTCCAACGGACCACCTCTCGCCGCCATGAGAGCCGCAACGAGCTTCCTCTCATCGGATCAGCTCACAAACCCCAACACATTCATAAAAATCCTAGTCCTATCGTTCCTCTCCCTATCCCTCTTCTTCGCCGTCAGACACTTTTCCTCCGACACAACCTACTCTCATGAATT...

CDS

Download CDS FASTA

1989 bp · TkA07G395940|TK1151|CDS

ATGAGAGCCGCAACGAGCTTCCTCTCATCGGATCAGCTCACAAACCCCAACACATTCATAAAAATCCTAGTCCTATCGTTCCTCTCCCTATCCCTCTTCTTCGCCGTCAGACACTTTTCCTCCGACACAACCTACTCTCATGAATTCTCTCTACAGTTCCCCACCACCAACGCTACCACAGCCGTCCACGCCGCCGTCAATTCTACTACCAACAGTTCCACCACTTATTTTCCCCCACCAGCAATTGCGATCTCATCGCC...

Protein

Download Protein FASTA

662 aa · TkA07G395940|TK1151|PROTEIN

MRAATSFLSSDQLTNPNTFIKILVLSFLSLSLFFAVRHFSSDTTYSHEFSLQFPTTNATTAVHAAVNSTTNSSTTYFPPPAIAISSPPPPLQHEDVVERTGIVDENGAMTVNFVIGDYDSSLLENTVNDTLAERGVESDQNWEKIEKFRVCDQSRREYIPCLDNLDVVSKLNSTEKGEKYERHCPAKGKELDCIVPNPKGYKDHIPWPKSRDEVWYDNVPHTRLVEDKGGQNWISRNKDKFTFPGGGTQFIHGANQYLDQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G395940
TK1151 IDTkA07G395940
OH-1004 IDLXL04_012389
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)69.300
Protein coverage (%)TK1151 85.498 / OH-1004 83.655
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G395940
LocationChr07:99464272-99467374 (-)
DescriptionSimilar to At2g39750: Probable methyltransferase PMT11
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g77260 Probable methyltransferase PMT10. No verified direct reference in this release
At2g39750 Probable methyltransferase PMT11. No verified direct reference in this release
At5g06050 Probable methyltransferase PMT12. No verified direct reference in this release
At3g51070 Probable methyltransferase PMT27. No verified direct reference in this release
At5g64030 Probable methyltransferase PMT26. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012389 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0032259 methylation Biological Process
GO:0000138 Golgi trans cisterna Cellular Component
GO:0000139 Golgi membrane Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005768 endosome Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005797 Golgi medial cisterna Cellular Component
GO:0005802 trans-Golgi network Cellular Component
KEGG gene cross-reference
ath:AT1G29470
ath:AT1G77260
ath:AT2G34300
ath:AT2G39750
ath:AT5G06050
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.752
Rank 1 · TkA07G395940 · TK1151
Endoplasmic reticulum0.078
Rank 2 · TkA07G395940 · TK1151
Cell membrane0.076
Rank 3 · TkA07G395940 · TK1151
Extracellular0.057
Rank 4 · TkA07G395940 · TK1151
Cytoplasm0.045
Rank 5 · TkA07G395940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03141Methyltransf_29157-660 aa
PF05148Methyltransf_8264-303 aa
PF13489Methyltransf_23271-396 aa
PF13847Methyltransf_31277-400 aa
PF08241Methyltransf_11278-372 aa
PF13649Methyltransf_25278-369 aa
PF08242Methyltransf_12278-371 aa
PF20922Anamorsin_N333-398 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G395940PF03141Methyltransf_291576601.7e-226753.4
TkA07G395940PF05148Methyltransf_82643030.00617.2
TkA07G395940PF13489Methyltransf_232713961.3e-0525.7
TkA07G395940PF13847Methyltransf_312774001.3e-0732.3
TkA07G395940PF08241Methyltransf_112783722.8e-0938.2
TkA07G395940PF13649Methyltransf_252783696.5e-0730.7
TkA07G395940PF08242Methyltransf_122783717.3e-0627.3
TkA07G395940PF20922Anamorsin_N3333980.0514.0
TkA07G395940PF05148Methyltransf_83583730.00617.2
TkA07G395940PF05148Methyltransf_84574700.00617.2
TkA07G395940PF13489Methyltransf_235196261.3e-0525.7
TkA07G395940PF13649Methyltransf_255756156.5e-0730.7
TkA07G395940PF08242Methyltransf_125756177.3e-0627.3
TkA07G395940PF13847Methyltransf_315806251.3e-0732.3
TkA07G395940PF08241Methyltransf_115996192.8e-0938.2
TkA07G395940PF05148Methyltransf_85996380.00617.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94KE1Arabidopsis thalianasp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT1062.900%Swiss-ProtHigh
O22285Arabidopsis thalianasp|O22285|PMTB_ARATH Probable methyltransferase PMT1168.800%Swiss-ProtHigh
Q9FG39Arabidopsis thalianasp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT1266.600%Swiss-ProtHigh
Q9SD39Arabidopsis thalianasp|Q9SD39|PMTR_ARATH Probable methyltransferase PMT2749.800%Swiss-ProtMedium
Q8L7V3Arabidopsis thalianasp|Q8L7V3|PMTQ_ARATH Probable methyltransferase PMT2648.600%Swiss-ProtMedium

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