LXL04_012389 | RubberDandelionOmics

Gene overview

LXL04_012389

Reference: OH-1004 Chr: Chr03 Coordinates: 11510646-11513383 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2022 bp · LXL04_012389|LXL04_012389|OH1004|cDNA

ATGCTAACAAAGATGAAGGGATTTGGTTCGTTAAAATCGCCGATTTTGGTGAAAACTGCTGGTTTTGCCTTCGTCGCGCTAGCTTTTTTCTACTTAGGTAAGCATTGGTCCGATGATACATATCAGCAAATGATATTTTTCAGTTCGAACTCCAATCCAAATGCAAAAACCCCTTCGATTTCGATTTCACCAAATTATAACAAAAGCTTCGATATCAAGTCTCTAATTAACGACACAAAAGAAGTAGATACAGTAGTAGA...

CDS

Download CDS FASTA

2022 bp · LXL04_012389|LXL04_012389|OH1004|CDS

ATGCTAACAAAGATGAAGGGATTTGGTTCGTTAAAATCGCCGATTTTGGTGAAAACTGCTGGTTTTGCCTTCGTCGCGCTAGCTTTTTTCTACTTAGGTAAGCATTGGTCCGATGATACATATCAGCAAATGATATTTTTCAGTTCGAACTCCAATCCAAATGCAAAAACCCCTTCGATTTCGATTTCACCAAATTATAACAAAAGCTTCGATATCAAGTCTCTAATTAACGACACAAAAGAAGTAGATACAGTAGTAGA...

Protein

Download Protein FASTA

673 aa · LXL04_012389|LXL04_012389|OH1004|PROTEIN

MLTKMKGFGSLKSPILVKTAGFAFVALAFFYLGKHWSDDTYQQMIFFSSNSNPNAKTPSISISPNYNKSFDIKSLINDTKEVDTVVDQTLPAIPPEPSLSPPPPPPPAVQRLGVVDENGVMRDEFEVGEYDPDVVENRNNETEVVQDVNAVVRVQKFETCPVTMREYIPCLDNEQAIKELKSTEKGEKFERHCPEKEKALNCLVPPPKGYKAPIPWPTSRDEVWYSNVPHAQLAEYKGGQNWITVDKDKFKFPGGGTQFI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012389`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012389

Location Chr03:11510646-11513383 (-)

Description Similar to At2g39750: Probable methyltransferase PMT11

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g39750`	Probable methyltransferase PMT11.	No verified direct reference in this release
`At5g06050`	Probable methyltransferase PMT12.	No verified direct reference in this release
`At1g77260`	Probable methyltransferase PMT10.	No verified direct reference in this release
`At2g34300`	Probable methyltransferase PMT25.	No verified direct reference in this release
`At1g29470`	Probable methyltransferase PMT24.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_012389 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0032259 methylation Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0005802 trans-Golgi network Cellular Component

KEGG gene cross-reference

ath:AT1G29470

ath:AT1G77260

ath:AT2G34300

ath:AT2G39750

ath:AT5G06050

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.812

Rank 1 · LXL04_012389 · OH-1004

Endoplasmic reticulum0.076

Rank 2 · LXL04_012389 · OH-1004

Cell membrane0.064

Rank 3 · LXL04_012389 · OH-1004

Extracellular0.051

Rank 4 · LXL04_012389 · OH-1004

Cytoplasm0.041

Rank 5 · LXL04_012389 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03141.23Methyltransf_29166-669 aa

PF08241.19Methyltransf_11287-381 aa

PF13649.13Methyltransf_25287-378 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012389	`PF03141.23`	Methyltransf_29	166	669	1.5e-232	773.4
LXL04_012389	`PF08241.19`	Methyltransf_11	287	381	8e-10	40.0
LXL04_012389	`PF13649.13`	Methyltransf_25	287	378	1.1e-07	33.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22285`	Arabidopsis thaliana	Probable methyltransferase PMT11	68.175%	Swiss-Prot	strong database homology
`Q9FG39`	Arabidopsis thaliana	Probable methyltransferase PMT12	64.371%	Swiss-Prot	strong database homology
`Q94KE1`	Arabidopsis thaliana	Probable methyltransferase PMT10	62.593%	Swiss-Prot	strong database homology
`Q0WT31`	Arabidopsis thaliana	Probable methyltransferase PMT25	49.533%	Swiss-Prot	moderate database homology
`Q6NPR7`	Arabidopsis thaliana	Probable methyltransferase PMT24	48.799%	Swiss-Prot	moderate database homology

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