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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G371130
Reference: TK1151 Chr: Chr07 Coordinates: 93073334-93078463 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2474 bp · TkA07G371130|TK1151|cDNA

ATGGGTTGAAACTTGAAACCGAAAACCCGCCCATCCAAAAAACAGAAACTCGAACCCAAGGAGACCTTCACGTGGTAATTGTCTAAAGTCTAAACTCACAACGACACAGCCGGATTGGAACATTCGTAGACGACCGCACCCGCAGCCCAAATTTTCTCCGTCGCCGGTACAACTCATCCGCCACAGCCATCCTCGGAGGCGCCACCACAGTCTCAATATCATATCCTCGAACCTCTCATATTTATGCACTTTCAAAGAGC...

CDS

Download CDS FASTA

2121 bp · TkA07G371130|TK1151|CDS

ATGATGGTCGAAGATCTAGGAATCGAAGCTAAGGAATCTGCAGTACGCGAGGTTGCGAAGCTCTTGCCGCTTCCTGAGCTTTTGCTATCCATTTCTTCAATCAAGGCAGATTACATTGCTCGGCAGCAGGCAACTGATGCACAGCTTAGCACTATGGTTGCTGAACAGGTTGAACAAGCACAAGCTGGTCTAAAAGCACTTGGTTCATCCGAAAAGAATGTAAATCAACTCCGTCAAAACTTTGTTAATATCGAGAGGCT...

Protein

Download Protein FASTA

706 aa · TkA07G371130|TK1151|PROTEIN

MMVEDLGIEAKESAVREVAKLLPLPELLLSISSIKADYIARQQATDAQLSTMVAEQVEQAQAGLKALGSSEKNVNQLRQNFVNIERLCQECQTLIENHDQIKLLSNARNNLNTTLKDVEGMMSISSEAAAAHDSLSDDKELINTYERLTALDGKRRFALAAASTHEEEVGRLRSYFEEVDRTWETFEQTLWSHISNFFQLAKESPQTLVRALRVVEMQEILDEQIAKSTDALASSRNLAAQKAKQGKCYKDKCYEHITKA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G371130
TK1151 IDTkA07G371130
OH-1004 IDLXL04_030023
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)94.300
Protein coverage (%)TK1151 98.584 / OH-1004 91.826
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G371130
LocationChr07:93073334-93078463 (-)
DescriptionSimilar to SEC6: Exocyst complex component SEC6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g71820 Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion.
The Arabidopsis exocyst complex is involved in cytokinesis and cell plate maturation.2010 · DOI: 10.1105/tpc.110.074351
Visualization of the exocyst complex dynamics at the plasma membrane of Arabidopsis thaliana.2013 · DOI: 10.1091/mbc.e12-06-0492
Regulation of cytokinesis by exocyst subunit SEC6 and KEULE in Arabidopsis thaliana.2013 · DOI: 10.1093/mp/sst082

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030023 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000281 mitotic cytokinesis Biological Process
GO:0006887 exocytosis Biological Process
GO:0006904 vesicle docking involved in exocytosis Biological Process
GO:0007009 plasma membrane organization Biological Process
GO:0015031 protein transport Biological Process
GO:0016080 synaptic vesicle targeting Biological Process
GO:0016081 synaptic vesicle docking Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0032456 endocytic recycling Biological Process
GO:0043001 Golgi to plasma membrane protein transport Biological Process
GO:0051601 exocyst localization Biological Process
GO:0060321 acceptance of pollen Biological Process
KEGG gene cross-reference
ath:AT1G71820
bta:513138
cel:CELE_F09E5.5
ddi:DDB_G0293520
dme:Dmel_CG5341
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.627
Rank 1 · TkA07G371130 · TK1151
Golgi apparatus0.283
Rank 2 · TkA07G371130 · TK1151
Cell membrane0.175
Rank 3 · TkA07G371130 · TK1151
Nucleus0.152
Rank 4 · TkA07G371130 · TK1151
Lysosome / Vacuole0.140
Rank 5 · TkA07G371130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04100Vps53_N13-116 aa
PF00615RGS31-60 aa
PF06046Sec648-92 aa
PF03908Sec2050-97 aa
PF13373Dsc3_C64-97 aa
PF03908Sec20109-152 aa
PF13373Dsc3_C166-243 aa
PF06046Sec6176-684 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G371130PF04100Vps53_N131160.004816.7
TkA07G371130PF00615RGS31600.6611.1
TkA07G371130PF06046Sec648922.3e-112377.0
TkA07G371130PF03908Sec2050970.1612.6
TkA07G371130PF13373Dsc3_C64970.03515.0
TkA07G371130PF03908Sec201091520.1612.6
TkA07G371130PF13373Dsc3_C1662430.03515.0
TkA07G371130PF06046Sec61766842.3e-112377.0
TkA07G371130PF04100Vps53_N1932530.004816.7
TkA07G371130PF03908Sec202162340.1612.6
TkA07G371130PF00615RGS2352640.6611.1
TkA07G371130PF00615RGS5595830.6611.1
TkA07G371130PF04100Vps53_N5665960.004816.7
TkA07G371130PF04100Vps53_N5936390.004816.7
TkA07G371130PF03908Sec205946430.1612.6
TkA07G371130PF00615RGS6146600.6611.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94AI6Arabidopsis thalianasp|Q94AI6|SEC6_ARATH Exocyst complex component SEC678.900%Swiss-ProtHigh

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