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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G320640
Reference: TK1151 Chr: Chr07 Coordinates: 80279517-80281003 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

806 bp · TkA07G320640|TK1151|cDNA

ATGCTATTTCTTTGCGAAGGGGAACTCATTTCGGCGATGAAGGAGACGAACACCAAGAAGATGGATCCAAGACCAGAAAACAACTCTCTCCTCCTTCCTTCTCTGTTCTGTCCTCCGAATCCATCTGCCCTCTCCTCCTTCGCTGTTCTCTCCTCCCGATTAACTTCCGACGATCATAGGAGATCCAACAACGACGATGTTGTCCTTTCGAGGTCGTCGACCAGGTTATCGTGGGCGCGTTCTCTCAGCGTAGCATCCAC...

CDS

Download CDS FASTA

501 bp · TkA07G320640|TK1151|CDS

ATGCTATTTCTTTGCGAAGGGGAACTCATTTCGGCGATGAAGGAGACGAACACCAAGAAGATGGATCCAAGACCAGAAAACAACTCTCTCCTCCTTCCTTCTCTGTTCTGTCCTCCGAATCCATCTGCCCTCTCCTCCTTCGCTGTTCTCTCCTCCCGATTAACTTCCGACGATCATAGGAGATCCAACAACGACGATGTTGTCCTTTCGAGGTCGTCGACCAGGTTATCGTGGGCGCGTTCTCTCAGCGTAGCATCCAC...

Protein

Download Protein FASTA

166 aa · TkA07G320640|TK1151|PROTEIN

MLFLCEGELISAMKETNTKKMDPRPENNSLLLPSLFCPPNPSALSSFAVLSSRLTSDDHRRSNNDDVVLSRSSTRLSWARSLSVASTSDRLELIPTATLGTSAVPSGSRRSYLSGDARAEGGSERRRSTSEPKGTGARLYSDRMNKAVDEQVKCLLWMNMDEQGCG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G320640
TK1151 IDTkA07G320640
OH-1004 IDLXL04_000596
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)89.700
Protein coverage (%)TK1151 17.470 / OH-1004 6.291
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G320640
LocationChr07:80279517-80281003 (+)
DescriptionSimilar to PCRK1: Serine/threonine-protein kinase PCRK1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000596 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002221 pattern recognition receptor signaling pathway Biological Process
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0009617 response to bacterium Biological Process
GO:0010073 meristem maintenance Biological Process
GO:0010078 maintenance of root meristem identity Biological Process
GO:0010088 phloem development Biological Process
GO:0010492 maintenance of shoot apical meristem identity Biological Process
GO:0031663 lipopolysaccharide-mediated signaling pathway Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0045087 innate immune response Biological Process
KEGG gene cross-reference
ath:AT3G09830
ath:AT3G28690
ath:AT5G03320
ath:AT5G15080
ath:AT5G47070
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.473
Rank 1 · TkA07G320640 · TK1151
Cytoplasm0.336
Rank 2 · TkA07G320640 · TK1151
Cell membrane0.188
Rank 3 · TkA07G320640 · TK1151
Endoplasmic reticulum0.087
Rank 4 · TkA07G320640 · TK1151
Mitochondrion0.059
Rank 5 · TkA07G320640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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