RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G307990
Reference: TK1151 Chr: Chr07 Coordinates: 77308605-77315981 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4074 bp · TkA07G307990|TK1151|cDNA

GGAATTTCTGCATCCGTTGCTCTTCCAAATCCCTACCAAGTTCAAGCAAACCCTCTCTACACGAACTCTTATCCAATCAACCATGGAGAGGATCAACGTTGCAGTGAGAGCAAGACCTCTCTCGCCGGAAGATGCCAAGTGCAGCCCTTGGAGAATTTCCGATAACTCCATTTTGCTCGCAAACCCTACAACCAAGTTCGAATTCGACCGGATTTTCAGAGAGGATTGTAGAACTGTGGATGTTTATGAGTCAAGAACTA...

CDS

Download CDS FASTA

3954 bp · TkA07G307990|TK1151|CDS

ATGGAGAGGATCAACGTTGCAGTGAGAGCAAGACCTCTCTCGCCGGAAGATGCCAAGTGCAGCCCTTGGAGAATTTCCGATAACTCCATTTTGCTCGCAAACCCTACAACCAAGTTCGAATTCGACCGGATTTTCAGAGAGGATTGTAGAACTGTGGATGTTTATGAGTCAAGAACTAAAGCTATTGTTTCCGCTGCTATTGGTGGATTTAATGGCACTGTTTTTGCATATGGACAAACCAACAGTGGCAAAACACATAC...

Protein

Download Protein FASTA

1317 aa · TkA07G307990|TK1151|PROTEIN

MERINVAVRARPLSPEDAKCSPWRISDNSILLANPTTKFEFDRIFREDCRTVDVYESRTKAIVSAAIGGFNGTVFAYGQTNSGKTHTMRGSSVEPGVIPLAVHDLFDMIQQDVDREFLLRMSYMEIYNEEINDLLAPEHRKLQIHESIERGIFVAGLKEEIVSSPKQVLEFMDFGEAHRHIGETNMNLHSSRSHTIFRMIIESRDKVEDDRAESSCDAVRVSVLNLVDLAGSERAAKTGAEGVRLKEGSHINKSLMTLGT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G307990
TK1151 IDTkA07G307990
OH-1004 IDLXL04_029375
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G307990
LocationChr07:77308605-77315981 (-)
DescriptionSimilar to KIN7O: Kinesin-like protein KIN-7O
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
UniProt: F4J2K4 Kinesin-like protein KIN-7O. No verified direct reference in this release
At1g59540 Kinesin-like protein KIN-7N. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os09g0421200 Kinesin-like protein KIN-7I. No verified direct reference in this release
Os11g0552600 Kinesin-like protein KIN-7L. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029375 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000226 microtubule cytoskeleton organization Biological Process
GO:0000278 mitotic cell cycle Biological Process
GO:0007018 microtubule-based movement Biological Process
GO:0008608 attachment of spindle microtubules to kinetochore Biological Process
GO:0033044 regulation of chromosome organization Biological Process
GO:0042327 positive regulation of phosphorylation Biological Process
GO:0140694 membraneless organelle assembly Biological Process
GO:1901987 regulation of cell cycle phase transition Biological Process
GO:0000776 kinetochore Cellular Component
GO:0000779 condensed chromosome, centromeric region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005635 nuclear envelope Cellular Component
KEGG gene cross-reference
ath:AT1G59540
ath:AT3G10180
dosa:Os09g0421200
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.713
Rank 1 · TkA07G307990 · TK1151
Nucleus0.244
Rank 2 · TkA07G307990 · TK1151
Cell membrane0.098
Rank 3 · TkA07G307990 · TK1151
Golgi apparatus0.090
Rank 4 · TkA07G307990 · TK1151
Lysosome / Vacuole0.045
Rank 5 · TkA07G307990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00225Kinesin33-324 aa
PF16796Microtub_bd34-135 aa
PF28533DUF8429121-143 aa
PF28533DUF8429344-393 aa
PF20270CATRA-C521-560 aa
PF28533DUF8429537-571 aa
PF28533DUF8429637-683 aa
PF28533DUF8429737-831 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G307990PF00225Kinesin333242e-106356.4
TkA07G307990PF16796Microtub_bd341356e-2072.4
TkA07G307990PF28533DUF84291211430.01515.9
TkA07G307990PF28533DUF84293443930.01515.9
TkA07G307990PF20270CATRA-C5215600.01117.2
TkA07G307990PF28533DUF84295375710.01515.9
TkA07G307990PF28533DUF84296376830.01515.9
TkA07G307990PF28533DUF84297378310.01515.9
TkA07G307990PF28533DUF84298239470.01515.9
TkA07G307990PF20270CATRA-C8649140.01117.2
TkA07G307990PF16796Microtub_bd8809786e-2072.4
TkA07G307990PF20270CATRA-C98710940.01117.2
TkA07G307990PF28533DUF8429104011470.01515.9
TkA07G307990PF28533DUF8429117412970.01515.9
TkA07G307990PF16796Microtub_bd117611906e-2072.4
TkA07G307990PF16796Microtub_bd117711886e-2072.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4J2K4Arabidopsis thalianasp|F4J2K4|KN7O_ARATH Kinesin-like protein KIN-7O49.100%Swiss-ProtMedium
Q9S7P3Arabidopsis thalianasp|Q9S7P3|KN7N_ARATH Kinesin-like protein KIN-7N60.300%Swiss-ProtLow
B9G3M6Oryza sativa subsp. japonicasp|B9G3M6|KN7I_ORYSJ Kinesin-like protein KIN-7I48.000%Swiss-ProtMedium
Q2R2P7Oryza sativa subsp. japonicasp|Q2R2P7|KN7L_ORYSJ Kinesin-like protein KIN-7L57.500%Swiss-ProtLow

JBrowse

View in Genome Browser