TkA07G306540 | RubberDandelionOmics

Gene overview

TkA07G306540

Reference: TK1151 Chr: Chr07 Coordinates: 76965622-76967783 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1017 bp · TkA07G306540|TK1151|cDNA

ATGGAGGGTCCAAATCGAGAGCAATTACAGTTTGTGAAATGTATTTCCCTCTATATCGCAAAGATCGGCAACAAAATCACGAGAAGTTTATTCTACACGATTGCAAGTGTTCACCACCAAAGTGTTATCAATTTCAAGATGTGGCCAGATATCATTGCGAAAGAAAAAGATGGAGGACTGGATGTAATCGAGACTTATATTTTCTGGAATTACCATACTTACATTTGTACAAAGGATCCCCTATTCGGTTACATTTCATT...

CDS

Download CDS FASTA

1017 bp · TkA07G306540|TK1151|CDS

ATGGAGGGTCCAAATCGAGAGCAATTACAGTTTGTGAAATGTATTTCCCTCTATATCGCAAAGATCGGCAACAAAATCACGAGAAGTTTATTCTACACGATTGCAAGTGTTCACCACCAAAGTGTTATCAATTTCAAGATGTGGCCAGATATCATTGCGAAAGAAAAAGATGGAGGACTGGATGTAATCGAGACTTATATTTTCTGGAATTACCATACTTACATTTGTACAAAGGATCCCCTATTCGGTTACATTTCATT...

Protein

Download Protein FASTA

338 aa · TkA07G306540|TK1151|PROTEIN

MEGPNREQLQFVKCISLYIAKIGNKITRSLFYTIASVHHQSVINFKMWPDIIAKEKDGGLDVIETYIFWNYHTYICTKDPLFGYISFLESNSIPPTQTAPMKPREKLIEIKELDEFAQAAFQGYKSLNFIQSRIFQTTYYTNEKNLVCAPTGARKTNIAMIFVLHEFGQHFKDGYLHKNEFKIVYVAPMKALAAEVTKAFSHRLAPLNMVVKELTGDMCEFHAEMKLFLAKIVNLMKENLFASQGGPIVLAQVEIEFGNV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G306540`
TK1151 ID	TkA07G306540
OH-1004 ID	LXL04_029354
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	94.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G306540

Location Chr07:76965622-76967783 (-)

Description Similar to BRR2C: DExH-box ATP-dependent RNA helicase DExH14

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g61140`	RNA helicase that plays an essential role in pre-mRNA splicing as component of the U5 snRNP and U4/U6-U5 tri-snRNP complexes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029354 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006260 DNA replication Biological Process

GO:0006307 DNA alkylation repair Biological Process

GO:0006397 mRNA processing Biological Process

GO:0006513 protein monoubiquitination Biological Process

GO:0008380 RNA splicing Biological Process

GO:0032790 ribosome disassembly Biological Process

GO:0071569 protein ufmylation Biological Process

GO:0072344 rescue of stalled cytosolic ribosome Biological Process

GO:0140708 CAT tailing Biological Process

GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

KEGG gene cross-reference

ath:AT5G61140

bta:538416

hsa:10973

mmu:77987

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.456

Rank 1 · TkA07G306540 · TK1151

Nucleus0.364

Rank 2 · TkA07G306540 · TK1151

Mitochondrion0.135

Rank 3 · TkA07G306540 · TK1151

Endoplasmic reticulum0.073

Rank 4 · TkA07G306540 · TK1151

Extracellular0.071

Rank 5 · TkA07G306540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01301Glyco_hydro_3532-73 aa

PF00270DEAD130-218 aa

PF04851ResIII134-239 aa

PF01301Glyco_hydro_35220-301 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G306540	`PF01301`	Glyco_hydro_35	32	73	9.8e-24	85.2
TkA07G306540	`PF00270`	DEAD	130	218	2.5e-10	41.1
TkA07G306540	`PF04851`	ResIII	134	239	0.005	17.5
TkA07G306540	`PF01301`	Glyco_hydro_35	220	301	9.8e-24	85.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FNQ1`	Arabidopsis thaliana	sp\|Q9FNQ1\|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH14	86.500%	Swiss-Prot	Low

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