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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G304990
Reference: TK1151 Chr: Chr07 Coordinates: 76545918-76547703 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1226 bp · TkA07G304990|TK1151|cDNA

CCCTCTTCTTCCTCTTAAATTGTCTCACGTTCCCACCCCCCTTTCATCTCTGTCCCTCACTCTCTCTCTCTAAACCACCGCTAAACATATCTCCGATGTCTGCTTCAGGACCTACTGTTGATTCTTCAATAAACAATCAATGGAGACTTGATGGGAACAAGAAGACTCCTCCAAAAACTACGCTCTCAGCGGCAAAATTATGCTTTCTTCAATAGTTGTCCTCTTCGTCGTCGTCGTTTTCTTGGTTCTTCTCCACCTGT...

CDS

Download CDS FASTA

543 bp · TkA07G304990|TK1151|CDS

ATGCTTTCTTCAATAGTTGTCCTCTTCGTCGTCGTCGTTTTCTTGGTTCTTCTCCACCTGTACGCAAGATGGTATCTTCTACGCCTCCGCCGCCGTAACGACAACCGACGTGGTAATCGCCGCAACCGTTCCACCCGTGTTGTCTTCTACGTCGACTCGAATAATAATCTGGCAGTGCCCACCGGCGGGCTTGATGCGTCTGTATTGAAGGGACTTCCTTTGTTTGTGTACTCGTCGGAAACTCACGGAAATATGACGGA...

Protein

Download Protein FASTA

180 aa · TkA07G304990|TK1151|PROTEIN

MLSSIVVLFVVVVFLVLLHLYARWYLLRLRRRNDNRRGNRRNRSTRVVFYVDSNNNLAVPTGGLDASVLKGLPLFVYSSETHGNMTECAVCLSEFEEGEKGRILPKCKHSFHTECIDMWFHSNSTCPLCRSPVELGQSEMTISVEQETVFEPGQVLHLASQLKSMRIIRKRRRWQTGGRE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G304990
TK1151 IDTkA07G304990
OH-1004 IDLXL04_029337
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)92.800
Protein coverage (%)TK1151 85.000 / OH-1004 50.329
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G304990
LocationChr07:76545918-76547703 (-)
DescriptionSimilar to ATL2: RING-H2 finger protein ATL2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g16720 May be involved in the early steps of the plant defense signaling pathway. No verified direct reference in this release
At3g62690 RING-H2 finger protein ATL5. No verified direct reference in this release
At4g15975 May be involved in the early steps of the plant defense signaling pathway. No verified direct reference in this release
At2g47560 RING-H2 finger protein ATL64. No verified direct reference in this release
At1g53820 RING-H2 finger protein ATL60. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029337 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0065003 protein-containing complex assembly Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
GO:0061659 ubiquitin-like protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G72310
ath:AT2G47560
ath:AT3G16720
ath:AT3G62690
ath:AT4G15975
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.290
Rank 1 · TkA07G304990 · TK1151
Endoplasmic reticulum0.240
Rank 2 · TkA07G304990 · TK1151
Cell membrane0.236
Rank 3 · TkA07G304990 · TK1151
Nucleus0.208
Rank 4 · TkA07G304990 · TK1151
Golgi apparatus0.180
Rank 5 · TkA07G304990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13247Fer4_1168-117 aa
PF04423Rad50_zn_hook84-106 aa
PF22191IBR_185-121 aa
PF13920zf-C3HC4_386-134 aa
PF14446Prok-RING_186-116 aa
PF17120zf-RING_1686-127 aa
PF23145Zf_2nd_IFT12186-91 aa
PF13639zf-RING_287-130 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G304990PF13247Fer4_11681170.1113.4
TkA07G304990PF04423Rad50_zn_hook841063.98.1
TkA07G304990PF22191IBR_1851210.1912.4
TkA07G304990PF13920zf-C3HC4_3861343.7e-0524.1
TkA07G304990PF14446Prok-RING_1861160.02515.4
TkA07G304990PF17120zf-RING_16861270.02814.7
TkA07G304990PF23145Zf_2nd_IFT12186911.19.7
TkA07G304990PF13639zf-RING_2871301.8e-1454.4
TkA07G304990PF17123zf-RING_11871164.6e-1142.9
TkA07G304990PF13923zf-C3HC4_2871292.4e-0834.4
TkA07G304990PF14634zf-RING_5871304.2e-0627.3
TkA07G304990PF11793FANCL_C871250.0116.8
TkA07G304990PF21202SLX1_C871310.1413.2
TkA07G304990PF11789zf-Nse871290.511.0
TkA07G304990PF00097zf-C3HC4881293.6e-0730.7
TkA07G304990PF13445zf-RING_UBOX881274.3e-0524.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8L9T5Arabidopsis thalianasp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL256.200%Swiss-ProtHigh
Q9LZJ6Arabidopsis thalianasp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL545.700%Swiss-ProtMedium
Q8LF65Arabidopsis thalianasp|Q8LF65|ATL17_ARATH RING-H2 finger protein ATL1748.800%Swiss-ProtMedium
O22255Arabidopsis thalianasp|O22255|ATL64_ARATH RING-H2 finger protein ATL6448.200%Swiss-ProtMedium
P0C035Arabidopsis thalianasp|P0C035|ATL60_ARATH RING-H2 finger protein ATL6040.600%Swiss-ProtMedium

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