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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G294120
Reference: TK1151 Chr: Chr07 Coordinates: 73746581-73752388 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3198 bp · TkA07G294120|TK1151|cDNA

CGTCTCTCCAAAATCAACATCTTCCTCCACAAAACCTTCCCCAATTTTCACTCACACTTATTACCTACTGAATTCCCTGATCTATTTTAGCTTTACTTCATCCAACAGAAACCCTGAAATCGAACAATTCATACACTGCAAAGCTGGAGCAGTTGAAGACGATCGGTAGGGAGCTCGCAATGGGCTCCCAGGGTGGTTTCGGTCAGTCTAAGGAGTTCTTGGACCTCGTCAAATCAATCGGAGAAGCCCGATCCAAATCG...

CDS

Download CDS FASTA

2739 bp · TkA07G294120|TK1151|CDS

ATGGGCTCCCAGGGTGGTTTCGGTCAGTCTAAGGAGTTCTTGGACCTCGTCAAATCAATCGGAGAAGCCCGATCCAAATCGGAAGAAGACCGGATAGTTCTCCACGAGATCGAGATGCTTAAACGCCGAATCAACGAGCCGGATATCCCTAAAAGGAAGATGAAGGAGTATATCATCCGTCTTGTGTACATCGAGATGCTTGGTCATGATGCTTCTTTTGGGTACATTCATGCTGTTAAGATGACACACGATGATTCACT...

Protein

Download Protein FASTA

912 aa · TkA07G294120|TK1151|PROTEIN

MGSQGGFGQSKEFLDLVKSIGEARSKSEEDRIVLHEIEMLKRRINEPDIPKRKMKEYIIRLVYIEMLGHDASFGYIHAVKMTHDDSLLLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLVVCAALNAVCKLINEETIPAVVQQVVELLGHPKEGVRKKAVMALHSFYHRSPSSVNHLISHFRKKLCDNDPGVMGATLCPLYDLITIDVNLYKDLVVSFVNILKQVAERRLPKSYDYHQTPAPFIQIKLLKTLAI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G294120
TK1151 IDTkA07G294120
OH-1004 IDLXL04_029265
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 93.156
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G294120
LocationChr07:73746581-73752388 (-)
DescriptionSimilar to At1g31730: AP-4 complex subunit epsilon
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g31730 Subunit of novel type of clathrin- or non-clathrin-associated protein coat involved in targeting proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029265 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006605 protein targeting Biological Process
GO:0006886 intracellular protein transport Biological Process
GO:0006895 Golgi to endosome transport Biological Process
GO:0006896 Golgi to vacuole transport Biological Process
GO:0008104 intracellular protein localization Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0005794 Golgi apparatus Cellular Component
GO:0005802 trans-Golgi network Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0005905 clathrin-coated pit Cellular Component
GO:0009506 plasmodesma Cellular Component
KEGG gene cross-reference
ath:AT1G31730
ddi:DDB_G0280427
ddi:DDB_G0281957
hsa:23431
mmu:108011
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.567
Rank 1 · TkA07G294120 · TK1151
Golgi apparatus0.363
Rank 2 · TkA07G294120 · TK1151
Cell membrane0.173
Rank 3 · TkA07G294120 · TK1151
Lysosome / Vacuole0.144
Rank 4 · TkA07G294120 · TK1151
Nucleus0.140
Rank 5 · TkA07G294120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08915tRNA-Thr_ED15-81 aa
PF01602Adaptin_N40-583 aa
PF26715HEAT_GCN1_295-152 aa
PF11698V-ATPase_H_C100-172 aa
PF25786HEAT_GCN1_C108-187 aa
PF22956PIK3R4-like_middle110-175 aa
PF02985HEAT111-138 aa
PF23271HEAT_GCN1114-191 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G294120PF08915tRNA-Thr_ED15810.2212.4
TkA07G294120PF01602Adaptin_N405831.4e-86291.9
TkA07G294120PF26715HEAT_GCN1_2951520.06214.0
TkA07G294120PF11698V-ATPase_H_C1001720.09113.6
TkA07G294120PF25786HEAT_GCN1_C1081870.0116.6
TkA07G294120PF22956PIK3R4-like_middle1101756.1e-0522.7
TkA07G294120PF02985HEAT1111381.8e-0628.4
TkA07G294120PF23271HEAT_GCN11141910.0001922.3
TkA07G294120PF22928INTS1_R41152108.5e-0729.6
TkA07G294120PF20168PDS51172360.0002319.8
TkA07G294120PF08915tRNA-Thr_ED1181780.2212.4
TkA07G294120PF13646HEAT_21191896.3e-0833.5
TkA07G294120PF24714TOR1L1_N1212010.0002721.1
TkA07G294120PF12717Cnd11282766.7e-0833.5
TkA07G294120PF13513HEAT_EZ1321690.0009220.4
TkA07G294120PF12755Vac14_Fab1_bd1391700.1613.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8L7A9Arabidopsis thalianasp|Q8L7A9|AP4E_ARATH AP-4 complex subunit epsilon66.700%Swiss-ProtHigh

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