TkA07G291320 | RubberDandelionOmics

Gene overview

TkA07G291320

Reference: TK1151 Chr: Chr07 Coordinates: 73088887-73091321 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

849 bp · TkA07G291320|TK1151|cDNA

ATGATGAAGAGTGCTTACCGGAAAATGGATGAAGGCTGCCGGAAAAATAAGCTGCAACTCGCCGGAAAGAAGAGGAAGCAACAGCCGGCTGTAAACCTTTGGCCGGTCGCCGGAATCACAGAAAACGGAAGAGAAGAGGGCTGCCGGAGGAAGAAAGCCGGATGTCGCCTAGAGTTTGGCTGGAGTGCTCGATCGAATGAAGTGGGAGGAAAGGAGGTAGTAGGGTTTGTGTCGTTCAATTCTTGTCGCACCGAGAAATC...

CDS

Download CDS FASTA

849 bp · TkA07G291320|TK1151|CDS

ATGATGAAGAGTGCTTACCGGAAAATGGATGAAGGCTGCCGGAAAAATAAGCTGCAACTCGCCGGAAAGAAGAGGAAGCAACAGCCGGCTGTAAACCTTTGGCCGGTCGCCGGAATCACAGAAAACGGAAGAGAAGAGGGCTGCCGGAGGAAGAAAGCCGGATGTCGCCTAGAGTTTGGCTGGAGTGCTCGATCGAATGAAGTGGGAGGAAAGGAGGTAGTAGGGTTTGTGTCGTTCAATTCTTGTCGCACCGAGAAATC...

Protein

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282 aa · TkA07G291320|TK1151|PROTEIN

MMKSAYRKMDEGCRKNKLQLAGKKRKQQPAVNLWPVAGITENGREEGCRRKKAGCRLEFGWSARSNEVGGKEVVGFVSFNSCRTEKSVKERKKNGIREWIPVNTQASSRTDKFQHRKIQLGEIKSATDNFNNNNIIGQGGFGKVYKGALSTSKGQIRVAFKRLDHYYGQGDPEFLKEIIMLSGFTHKNLISLLGFCDEDGEKILVYEYASHRSLDRHLKSTTLTWRARIKICLGAAVGLWHYATFMAPRRPSKESSTMIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G291320`
TK1151 ID	TkA07G291320
OH-1004 ID	LXL04_029248
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	75.100
Protein coverage (%)	TK1151 73.404 / OH-1004 41.475 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G291320

Location Chr07:73088887-73091321 (-)

Description Similar to At5g39000: Putative receptor-like protein kinase At5g39000

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release
`At3g04690`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At5g28680`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At5g38990`	Probable receptor-like protein kinase At5g38990.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029248 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010038 response to metal ion Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0016324 apical plasma membrane Cellular Component

GO:0090404 pollen tube tip Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004714 transmembrane receptor protein tyrosine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT5G28680

ath:AT5G38990

ath:AT5G39000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.428

Rank 1 · TkA07G291320 · TK1151

Nucleus0.348

Rank 2 · TkA07G291320 · TK1151

Cell membrane0.241

Rank 3 · TkA07G291320 · TK1151

Endoplasmic reticulum0.079

Rank 4 · TkA07G291320 · TK1151

Mitochondrion0.070

Rank 5 · TkA07G291320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase131-225 aa

PF07714PK_Tyr_Ser-Thr133-240 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G291320	`PF00069`	Pkinase	131	225	1.7e-11	44.7
TkA07G291320	`PF07714`	PK_Tyr_Ser-Thr	133	240	3.3e-17	63.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LX66`	Arabidopsis thaliana	sp\|Q9LX66\|HERK_ARATH Receptor-like protein kinase HERK 1	37.600%	Swiss-Prot	Medium
`Q9FID8`	Arabidopsis thaliana	sp\|Q9FID8\|Y5900_ARATH Putative receptor-like protein kinase At5g39000	38.400%	Swiss-Prot	Medium
`Q9SR05`	Arabidopsis thaliana	sp\|Q9SR05\|ANX1_ARATH Receptor-like protein kinase ANXUR1	48.500%	Swiss-Prot	Low
`Q3E8W4`	Arabidopsis thaliana	sp\|Q3E8W4\|ANX2_ARATH Receptor-like protein kinase ANXUR2	48.500%	Swiss-Prot	Low
`Q9FID9`	Arabidopsis thaliana	sp\|Q9FID9\|Y5389_ARATH Probable receptor-like protein kinase At5g38990	43.600%	Swiss-Prot	Medium

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