TkA07G285520 | RubberDandelionOmics

Gene overview

TkA07G285520

Reference: TK1151 Chr: Chr07 Coordinates: 71638166-71654423 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2872 bp · TkA07G285520|TK1151|cDNA

TACCCAAAACCCGTTACAAATGTGGAATTCACCAATAACCAATTACTGGGCATCGATTTTTACGACGTCAACCTGATTGATGGCTTCAACTTGCCGGTACTTGTGGAGGCGACCGGCGGGTCAGGTTCCGGTTTACGCAGTTGCGCGAAGACAGGTTGTGCTGACGACTTGAACCAAAGGTGTCCACCCGAGTTGACTTTAACCGGTGGAGGCGCGTGTATGAGCGCGTGCCAGACGTTTGGGACGCCAGAGTATTGTTG...

CDS

Download CDS FASTA

3102 bp · TkA07G285520|TK1151|CDS

ATGACTACTTCCTCGTTGTCATCATCATCTTCACAGTTCCATGCAGGAGTGGTTCCTCAAATTCTGGGCTTTCTTTTCTTCTTGTTTTCTAATGGAGCTTCAGGGACTACCTTTACTTTCATAAATGACTGTGAGTTCACAATTTGGCCAGCAATCTCAGGCAAGCCTGATTTCAACCTCACTGGATTCGAGCTAACAAAGGGTAATTCACGCTCTTTGGAAGCTCCATTAGGTTGGTCGGGTCGTTTCTGGGGCAGGAC...

Protein

Download Protein FASTA

1033 aa · TkA07G285520|TK1151|PROTEIN

MTTSSLSSSSSQFHAGVVPQILGFLFFLFSNGASGTTFTFINDCEFTIWPAISGKPDFNLTGFELTKGNSRSLEAPLGWSGRFWGRTGCNFSGSSNGSCTTGDCGTGKMDCNRNTYPKPVTNVEFTNNQLLGIDFYDVNLIDGFNLPVLVEATGGSGSGLRSCAKTGCADDLNQRCPPELTLTGGGACMSACQTFGTPEYCCNSSFSTRSACKTTAYAQLFKSACPRSYSTPFDDETSMFICSDGDYVVRFCPAADSFSA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G285520`
TK1151 ID	TkA07G285520
OH-1004 ID	LXL04_029217
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	93.600
Protein coverage (%)	TK1151 99.806 / OH-1004 54.637 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G285520

Location Chr07:71638166-71654423 (-)

Description Similar to CES101: G-type lectin S-receptor-like serine/threonine-protein kinase CES101

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g16030`	Promotes the expression of genes involved in photosynthesis at least in dedifferentiated calli.	Arabidopsis mutants by activation tagging in which photosynthesis genes are expressed in dedifferentiated calli.2006 · DOI: 10.1093/pcp/pci242
`At1g67520`	G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520.	No verified direct reference in this release
`At4g21390`	G-type lectin S-receptor-like serine/threonine-protein kinase B120.	No verified direct reference in this release
`At1g65790`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release
`At4g21380`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029217 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006955 immune response Biological Process

GO:0007165 signal transduction Biological Process

GO:0009620 response to fungus Biological Process

GO:0045087 innate immune response Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0030246 carbohydrate binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G67520

ath:AT3G16030

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.855

Rank 1 · TkA07G285520 · TK1151

Endoplasmic reticulum0.076

Rank 2 · TkA07G285520 · TK1151

Cytoplasm0.072

Rank 3 · TkA07G285520 · TK1151

Nucleus0.041

Rank 4 · TkA07G285520 · TK1151

Lysosome / Vacuole0.029

Rank 5 · TkA07G285520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00314Thaumatin42-253 aa

PF08276PAN_2210-219 aa

PF01636APH243-256 aa

PF01453B_lectin304-408 aa

PF08276PAN_2536-594 aa

PF11883DUF3403549-557 aa

PF07714PK_Tyr_Ser-Thr713-914 aa

PF00069Pkinase713-916 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G285520	`PF00314`	Thaumatin	42	253	1.9e-66	224.4
TkA07G285520	`PF08276`	PAN_2	210	219	1.6e-05	25.6
TkA07G285520	`PF01636`	APH	243	256	0.097	13.1
TkA07G285520	`PF01453`	B_lectin	304	408	4.8e-25	88.8
TkA07G285520	`PF08276`	PAN_2	536	594	1.6e-05	25.6
TkA07G285520	`PF11883`	DUF3403	549	557	2.9e-05	24.8
TkA07G285520	`PF07714`	PK_Tyr_Ser-Thr	713	914	3.5e-48	164.9
TkA07G285520	`PF00069`	Pkinase	713	916	5.9e-44	151.1
TkA07G285520	`PF03109`	ABC1	721	741	1.1e-05	25.5
TkA07G285520	`PF03109`	ABC1	779	875	1.1e-05	25.5
TkA07G285520	`PF01636`	APH	806	860	0.097	13.1
TkA07G285520	`PF17667`	Pkinase_fungal	828	900	0.33	10.3
TkA07G285520	`PF12330`	Haspin_kinase	834	866	0.067	12.9
TkA07G285520	`PF11883`	DUF3403	986	1033	2.9e-05	24.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LW83`	Arabidopsis thaliana	sp\|Q9LW83\|CE101_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase CES101	41.100%	Swiss-Prot	Medium
`O64793`	Arabidopsis thaliana	sp\|O64793\|Y1675_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520	41.100%	Swiss-Prot	Medium
`O81906`	Arabidopsis thaliana	sp\|O81906\|B120_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase B120	39.500%	Swiss-Prot	Medium
`Q39086`	Arabidopsis thaliana	sp\|Q39086\|SD17_ARATH Receptor-like serine/threonine-protein kinase SD1-7	39.800%	Swiss-Prot	Medium
`O81905`	Arabidopsis thaliana	sp\|O81905\|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8	40.000%	Swiss-Prot	Medium

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