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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G279090
Reference: TK1151 Chr: Chr07 Coordinates: 69787681-69797644 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6769 bp · TkA07G279090|TK1151|cDNA

GTTCGAAACCCTCGTCCCTTTGTTCTTCTCTTCTTCTATACAAATACCACTCGCTACCATCAACCAAAATCGAGCACGGCAATAATTTTTATAAGTATTCATTGTTTGTGATAATTATGACACTGTTAGGTTTCTCAATTCCATTGAAGAAAAAACCCTAAGGATTGTTGAGGGGAATGAAATCATCTGACAGGAACGTTGAAAACTGTTGTGTGGAAAGTGATTATTGTTTGTTATATATAAGTATTGATTTATTAGAA...

CDS

Download CDS FASTA

4812 bp · TkA07G279090|TK1151|CDS

ATGGGAGGTGCGACATGGCAGTGTGATGGCTTTGAGGAAATCTTGACACATCAAGGTGGCTGTGCTGGCGTGCTTACATCAGACAGTTATGATGACGTGTCACTCACAGAGTCAGAAGATAAGATGAAGAGTGGCACTAAGAGAGAACGTGAAATCGATTTGAATATGCAAGTCACAACAGAGGAAACCGAGCCGGTTCTCAAGAGGCAGAAATCTGAAATTGAATCATGTGATCGGATGGATGAATTGGTCTCAACATC...

Protein

Download Protein FASTA

1603 aa · TkA07G279090|TK1151|PROTEIN

MGGATWQCDGFEEILTHQGGCAGVLTSDSYDDVSLTESEDKMKSGTKREREIDLNMQVTTEETEPVLKRQKSEIESCDRMDELVSTSDIQTNGEIVASSVKVEPQTEIETAEMLQTTSCCDNKDVVEKVDILESLHGNTELANLIKRARNSSLKNSELLQDCGIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAVLKYMHPMLVHQTLSALLKMQRRPEWEIRHGSLLGIKYLVAVRQEMLPDLLGLVLPACKAGLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G279090
TK1151 IDTkA07G279090
OH-1004 IDLXL04_028648
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)34.900
Protein coverage (%)TK1151 31.192 / OH-1004 37.628
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G279090
LocationChr07:69787681-69797644 (+)
DescriptionSimilar to CHR12: Probable ATP-dependent DNA helicase CHR12
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g54280 Involved in meristem development.
Identification of novel meristem factors involved in shoot regeneration through the analysis of temperature-sensitive mutants of Arabidopsis.2009 · DOI: 10.1111/j.1365-313x.2008.03750.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028648 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006261 DNA-templated DNA replication Biological Process
GO:0006302 double-strand break repair Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0007064 mitotic sister chromatid cohesion Biological Process
GO:0009408 response to heat Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0010078 maintenance of root meristem identity Biological Process
GO:0010231 maintenance of seed dormancy Biological Process
GO:0010492 maintenance of shoot apical meristem identity Biological Process
KEGG gene cross-reference
ath:AT3G06010
ath:AT5G19310
dosa:Os05g0144300
osa:4337784
sce:YOR290C
spo:2542638
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.579
Rank 1 · TkA07G279090 · TK1151
Cytoplasm0.371
Rank 2 · TkA07G279090 · TK1151
Cell membrane0.062
Rank 3 · TkA07G279090 · TK1151
Golgi apparatus0.058
Rank 4 · TkA07G279090 · TK1151
Mitochondrion0.055
Rank 5 · TkA07G279090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12054DUF3535178-205 aa
PF24987HEAT_EF3_N180-273 aa
PF25151TPR_Trm732_C181-236 aa
PF25786HEAT_GCN1_C185-270 aa
PF02985HEAT186-201 aa
PF24492HEAT_ECM29186-215 aa
PF13513HEAT_EZ186-198 aa
PF25767ARM_TBCD_2nd186-259 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G279090PF12054DUF35351782054.9e-103346.5
TkA07G279090PF24987HEAT_EF3_N1802738.3e-1142.9
TkA07G279090PF25151TPR_Trm732_C1812369.9e-0523.0
TkA07G279090PF25786HEAT_GCN1_C1852705.1e-0730.5
TkA07G279090PF02985HEAT1862017.1e-1451.3
TkA07G279090PF24492HEAT_ECM291862151.4e-0629.2
TkA07G279090PF13513HEAT_EZ1861981.5e-0526.1
TkA07G279090PF25767ARM_TBCD_2nd1862590.0004820.3
TkA07G279090PF25801HEAT_GCN1_C_21872310.0001921.7
TkA07G279090PF23702ARM_ECM291872370.02614.8
TkA07G279090PF13646HEAT_21872270.03315.2
TkA07G279090PF13646HEAT_21872740.03315.2
TkA07G279090PF24714TOR1L1_N1932852.2e-0524.7
TkA07G279090PF24140TPR_TNPO3_IPO13_3rd2072770.1113.4
TkA07G279090PF23227HEAT_MROH2B_C2112740.03814.0
TkA07G279090PF13513HEAT_EZ2232741.5e-0526.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
B5BT18Arabidopsis thalianasp|B5BT18|BTAF1_ARATH TATA-binding protein-associated factor BTAF165.400%Swiss-ProtHigh

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