RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G231230
Reference: TK1151 Chr: Chr07 Coordinates: 57926913-57931483 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2376 bp · TkA07G231230|TK1151|cDNA

TTTCTCCCTCTAGTCTTATAATTTACTCTACAAATAAAAAGATATAGTTAAAACTTAAAATAAGTCACGAGGTAAATTACATCCTCGGTAGTCGACCGCCAATCCACCAAGTGAACCCCAAAAACACCGTAGTTCCAATCCATCTCTCTCTCTCTCTCTCTCTCTCAATACAATGAGGGGGCATGATTGGATTAATTCAGTGTTACCAGACGAGTTGATCCTGGAGATCTTCCGCAACCTCGATTCGAAATCGAGCCGGG...

CDS

Download CDS FASTA

1827 bp · TkA07G231230|TK1151|CDS

ATGAGGGGGCATGATTGGATTAATTCAGTGTTACCAGACGAGTTGATCCTGGAGATCTTCCGCAACCTCGATTCGAAATCGAGCCGGGATGCCTGTTCTCTCGTCTGCCGGCGATGGTTGACCCTCGAACGCTTCAGCCGCGACACGATCCGGATCGGTGCCTCTGGTAGCCCTGATGCACTCGTTGACCTTCTCTCTCGTCGTTTTCCTAATGTTACTAACGTTTACATCGATGAACGCCTCTCTGTCTCTCTCCCCGT...

Protein

Download Protein FASTA

608 aa · TkA07G231230|TK1151|PROTEIN

MRGHDWINSVLPDELILEIFRNLDSKSSRDACSLVCRRWLTLERFSRDTIRIGASGSPDALVDLLSRRFPNVTNVYIDERLSVSLPVDFGRRRNPSHSALSWLRLHFVSEKNEAGGSESDSYCISDSGLTAVADGFMKLEKLSLIWCSNATSAGLTSVAEKCRFLKSLDLQGCYVGDQGLVAIGKCCRQLETLNLRFCEGLTDTGLVELAVGCGQTLKWLGVAACAKITDVSLEAVGSHCGSLETLSLDSEFVHNKGLLA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G231230
TK1151 IDTkA07G231230
OH-1004 IDLXL04_028853
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.300
Protein coverage (%)TK1151 50.000 / OH-1004 45.238
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G231230
LocationChr07:57926913-57931483 (-)
DescriptionSimilar to FBL4: F-box/LRR-repeat protein 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g15475 F-box/LRR-repeat protein 4. No verified direct reference in this release
At4g07400 Putative F-box/LRR-repeat protein 8. No verified direct reference in this release
At5g67250 Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028853 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006289 nucleotide-excision repair Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009723 response to ethylene Biological Process
GO:0009873 ethylene-activated signaling pathway Biological Process
GO:0010105 negative regulation of ethylene-activated signaling pathway Biological Process
GO:0010225 response to UV-C Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0019005 SCF ubiquitin ligase complex Cellular Component
KEGG gene cross-reference
ath:AT2G25490
ath:AT4G15475
hsa:84961
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.619
Rank 1 · TkA07G231230 · TK1151
Cytoplasm0.235
Rank 2 · TkA07G231230 · TK1151
Cell membrane0.083
Rank 3 · TkA07G231230 · TK1151
Plastid0.048
Rank 4 · TkA07G231230 · TK1151
Mitochondrion0.036
Rank 5 · TkA07G231230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937F-box-like10-40 aa
PF18511F-box_511-48 aa
PF00646F-box11-42 aa
PF24758LRR_At5g5637057-77 aa
PF13516LRR_6123-133 aa
PF13855LRR_8128-142 aa
PF24758LRR_At5g56370129-175 aa
PF12799LRR_4134-149 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G231230PF12937F-box-like10403.3e-0730.7
TkA07G231230PF18511F-box_511489.3e-0729.0
TkA07G231230PF00646F-box11427.1e-0626.4
TkA07G231230PF24758LRR_At5g5637057777.7e-1246.1
TkA07G231230PF13516LRR_61231335.1e-32108.1
TkA07G231230PF13855LRR_81281420.06313.8
TkA07G231230PF24758LRR_At5g563701291757.7e-1246.1
TkA07G231230PF12799LRR_41341494.2e-1453.0
TkA07G231230PF23952LRR_EndoS1351740.2212.5
TkA07G231230PF29594LRR_SKP21362363e-33115.9
TkA07G231230PF23247LRR_RPS21361730.01216.4
TkA07G231230PF25372LRR_FBXL151382482.1e-36126.1
TkA07G231230PF00560LRR_11381498.8e-0522.6
TkA07G231230PF23622LRR_At1g61320_AtMIF11412352.2e-0731.3
TkA07G231230PF27087LRR_TMOD-LMOD1461940.1712.2
TkA07G231230PF13516LRR_61611835.1e-32108.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C5D2Arabidopsis thalianasp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 456.600%Swiss-ProtLow
Q9S9X4Arabidopsis thalianasp|Q9S9X4|FBL8_ARATH Putative F-box/LRR-repeat protein 825.200%Swiss-ProtLow
Q9FE83Arabidopsis thalianasp|Q9FE83|SKIP2_ARATH F-box protein SKIP226.000%Swiss-ProtLow

JBrowse

View in Genome Browser