Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2019 bp · LXL04_028853|LXL04_028853|OH1004|cDNA
ATGGATGAACCTGAGGTTGTCAATTCCAACAAAGGAGAGACGGCAATTGTGGCCTTGACGGCTGGTAAAGATCGTCGAATGGTGGAGGCGGCCATCTATTCGACCGCCAATCCACCAAGTGAACCCCAAAAACACCGTAGTTCCAatccatctctctctctctctctctctctctctctctctctcaataCAATGAGGGGGCATGATTGGATTAATTCAGTGTTACCAGACGAGTTGATCCTGGAGATCTTCCGCAACCT...
2019 bp · LXL04_028853|LXL04_028853|OH1004|CDS
ATGGATGAACCTGAGGTTGTCAATTCCAACAAAGGAGAGACGGCAATTGTGGCCTTGACGGCTGGTAAAGATCGTCGAATGGTGGAGGCGGCCATCTATTCGACCGCCAATCCACCAAGTGAACCCCAAAAACACCGTAGTTCCAATCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAATACAATGAGGGGGCATGATTGGATTAATTCAGTGTTACCAGACGAGTTGATCCTGGAGATCTTCCGCAACCT...
Protein
Download Protein FASTA672 aa · LXL04_028853|LXL04_028853|OH1004|PROTEIN
MDEPEVVNSNKGETAIVALTAGKDRRMVEAAIYSTANPPSEPQKHRSSNPSLSLSLSLSLSLNTMRGHDWINSVLPDELILEIFRNLDSKSSRDACSLVCRRWLTLERFSRDTIRIGASGSPDALVDLLSRRFPNVTNVYIDERLSVSLPVDFGRRRNPSHSALSWLRLHFVSEKNEAGGSESDSYCISDSGLTAVADGFMKLEKLSLIWCSNATSAGLTSVAEKCRFLKSLDLQGCYVGDQGLVAIGKCCRQLETLNLR...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_028853 |
|---|---|
| TK1151 ID | TkA07G231230 |
| OH-1004 ID | LXL04_028853 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 99.300 |
| Protein coverage (%) | TK1151 50.000 / OH-1004 45.238Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_028853 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:70939720-70943862 (-) | |||||||||
| Description | Similar to FBL4: F-box/LRR-repeat protein 4 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006289 nucleotide-excision repair Biological Process GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0009723 response to ethylene Biological Process GO:0009873 ethylene-activated signaling pathway Biological Process GO:0010105 negative regulation of ethylene-activated signaling pathway Biological Process GO:0010225 response to UV-C Biological Process GO:0016567 protein ubiquitination Biological Process GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0019005 SCF ubiquitin ligase complex Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G25490 ath:AT4G15475 hsa:84961 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12937.13F-box-like74-104 aaPF18511.7F-box_575-112 aaPF00646.39F-box75-106 aaPF29594.1LRR_SKP2200-304 aaPF25372.2LRR_FBXL15202-312 aaPF25372.2LRR_FBXL15279-403 aaPF25372.2LRR_FBXL15405-533 aaPF29594.1LRR_SKP2449-611 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_028853 | PF12937.13 | F-box-like | 74 | 104 | 3.8e-07 | 30.5 |
| LXL04_028853 | PF18511.7 | F-box_5 | 75 | 112 | 9.7e-07 | 28.9 |
| LXL04_028853 | PF00646.39 | F-box | 75 | 106 | 8e-06 | 26.3 |
| LXL04_028853 | PF29594.1 | LRR_SKP2 | 200 | 304 | 2.7e-33 | 116.1 |
| LXL04_028853 | PF25372.2 | LRR_FBXL15 | 202 | 312 | 1e-36 | 127.2 |
| LXL04_028853 | PF25372.2 | LRR_FBXL15 | 279 | 403 | 1e-36 | 127.2 |
| LXL04_028853 | PF25372.2 | LRR_FBXL15 | 405 | 533 | 1e-36 | 127.2 |
| LXL04_028853 | PF29594.1 | LRR_SKP2 | 449 | 611 | 2.7e-33 | 116.1 |
| LXL04_028853 | PF25372.2 | LRR_FBXL15 | 536 | 648 | 1e-36 | 127.2 |
| LXL04_028853 | PF13516.13 | LRR_6 | 536 | 559 | 1.2e-29 | 100.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.