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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G213750
Reference: TK1151 Chr: Chr07 Coordinates: 53730625-53741307 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4638 bp · TkA07G213750|TK1151|cDNA

ATTGAATATCGTGAATCATGATCGAGTGAACAACCCAGAATTGCCTTACAATGCTTCTGTTACTCTTGAGCGCATGATTTGCAAATTTTAACAGAGAAACGAAATAGGCGACTTTGGCCCCTGATCGAAGCATCGAAGAAAGCATATCCGAGTCTGACTATTCAACTCTCTCCATAAGAAAGCATATTCTCCTGGAAAGAAGCTCATATCCGATTTTTTGATGCGGCCGTGCTCGTGCGGCGCCTAATGTCCAAGAGAAG...

CDS

Download CDS FASTA

2526 bp · TkA07G213750|TK1151|CDS

ATGAAGCGTTTTGTGTATGTCAATGACGACGATTCCTCCCATGAGCTTTACTGTGATAACCGTATATCCAACAGAAAGTACACATTGCTAAATTTTCTCCCCAAAAATCTATGGGAACAGTTCAGCCGGTTCATGAACCAATACTTTTTGTTGATCGCTTGTCTTCAACTATGGCCGCTTATAACGCCAGTAAACCCCGCTAGTACGTGGGGTCCGCTCATATTTATCTTCGCAGTCTCAGCAACAAAAGAGGCATGGGA...

Protein

Download Protein FASTA

841 aa · TkA07G213750|TK1151|PROTEIN

MKRFVYVNDDDSSHELYCDNRISNRKYTLLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSATKEAWDDYNRYLSDKKANEKQVWVVRQGSKKLIQAQEIHVGNLVWLRENDEVPCDLVLLGTSEPQGVCYVETAALDGETDLKTRNIPPACMGIDSELLHKIKGVMECPLPDKDIRRFDANVRLFPPFLDNDVCPLSIKNTILQSCYLRNTEWACGVAVYTGNETKMGMSRGVAEPKLTA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G213750
TK1151 IDTkA07G213750
OH-1004 IDLXL04_028783
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)98.800
Protein coverage (%)TK1151 98.098 / OH-1004 75.361
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G213750
LocationChr07:53730625-53741307 (+)
DescriptionSimilar to ALA2: Phospholipid-transporting ATPase 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g44240 Involved in transport of phospholipids.
Intracellular targeting signals and lipid specificity determinants of the ALA/ALIS P4-ATPase complex reside in the catalytic ALA alpha-subunit.2010 · DOI: 10.1091/mbc.e09-08-0656

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028783 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007030 Golgi organization Biological Process
GO:0030335 positive regulation of cell migration Biological Process
GO:0034220 monoatomic ion transmembrane transport Biological Process
GO:0045332 phospholipid translocation Biological Process
GO:0061092 positive regulation of phospholipid translocation Biological Process
GO:0140331 aminophospholipid translocation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005768 endosome Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005802 trans-Golgi network Cellular Component
KEGG gene cross-reference
ath:AT5G44240
bta:317692
hsa:10396
hsa:79895
mmu:11980
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.388
Rank 1 · TkA07G213750 · TK1151
Endoplasmic reticulum0.329
Rank 2 · TkA07G213750 · TK1151
Cytoplasm0.257
Rank 3 · TkA07G213750 · TK1151
Golgi apparatus0.232
Rank 4 · TkA07G213750 · TK1151
Lysosome / Vacuole0.117
Rank 5 · TkA07G213750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16209PhoLip_ATPase_N5-70 aa
PF10537WAC_Acf1_DNA_bd76-109 aa
PF00702Hydrolase86-115 aa
PF00122E1-E2_ATPase99-163 aa
PF16212PhoLip_ATPase_C274-288 aa
PF13637Ank_4335-351 aa
PF00702Hydrolase378-391 aa
PF13246Cation_ATPase429-615 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G213750PF16209PhoLip_ATPase_N5701.3e-2589.6
TkA07G213750PF10537WAC_Acf1_DNA_bd761090.212.8
TkA07G213750PF00702Hydrolase861157e-1350.1
TkA07G213750PF00122E1-E2_ATPase991632.3e-0731.3
TkA07G213750PF16212PhoLip_ATPase_C2742882.3e-1764.3
TkA07G213750PF13637Ank_43353510.001319.7
TkA07G213750PF00702Hydrolase3783917e-1350.1
TkA07G213750PF13246Cation_ATPase4296153.9e-1866.6
TkA07G213750PF08282Hydrolase_34665002.3e-0525.0
TkA07G213750PF10537WAC_Acf1_DNA_bd5295480.212.8
TkA07G213750PF00702Hydrolase5576967e-1350.1
TkA07G213750PF13344Hydrolase_66026430.1412.9
TkA07G213750PF13637Ank_46166530.001319.7
TkA07G213750PF10537WAC_Acf1_DNA_bd7087360.212.8
TkA07G213750PF00702Hydrolase7257647e-1350.1
TkA07G213750PF08282Hydrolase_37357682.3e-0525.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P98205Arabidopsis thalianasp|P98205|ALA2_ARATH Phospholipid-transporting ATPase 284.400%Swiss-ProtHigh

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