TkA07G207910 | RubberDandelionOmics

Gene overview

TkA07G207910

Reference: TK1151 Chr: Chr07 Coordinates: 52350768-52353276 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1573 bp · TkA07G207910|TK1151|cDNA

GAAACTTGGGAACAGGGCGAAGCACCCAATTCAATCTACCAAAACGCAACCATTTTGTCTTCCGAAATAACTCTGCCACATACATCGTCAACGATGGCAGATGAAGAAGAACATCACGAAACAGAGCTCAGCGATAATCAGAAAATCGACATTGCCAAATGGTTTCTCCTCAATTCTCCCCCCGGTGAAATCCAATACGTTGCCAAAGATCTAAGATCGGTTTTAAGTGATGAGAACGTGTATCGAATGGCGGCTTCAGA...

CDS

Download CDS FASTA

708 bp · TkA07G207910|TK1151|CDS

ATGTCGTCTTTGCAGGTGCTGGTTTCCTCATTTAGCGAGATCAGTGAGGATGAATATCTTGATCCTAGGACTGCACAAATTGCTAAAGTTGACCATGTCAAACAAATTTGTACAGATATAAGACCAGCTAAAGACGAGGAACTTCCAACCCCCTACATAGAAGAGTACAGGTGTGCGCTGGATGCAGAAGTGTGCAAGTACGTGGCAGAGGCGTACCCAAAAGGTGTGTGCTCGGTGTACTGTACACGTGGAAAAGATGT...

Protein

Download Protein FASTA

235 aa · TkA07G207910|TK1151|PROTEIN

MSSLQVLVSSFSEISEDEYLDPRTAQIAKVDHVKQICTDIRPAKDEELPTPYIEEYRCALDAEVCKYVAEAYPKGVCSVYCTRGKDVDEPGFDFQLVVLITATRLSPQNFCNGSWRSIWNIEFMDELQTVEVRGKMQVGAHYFEEGNVQLEAQHECKDSTMFQSPDDSSFSLANIIRHHETEYMTSLETSYSNLPDSTFKDLRRKLPVTRTLFPWHNTMQFSLTRDITKELGIEK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G207910`
TK1151 ID	TkA07G207910
OH-1004 ID	LXL04_028757
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	67.800
Protein coverage (%)	TK1151 97.872 / OH-1004 78.125 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G207910

Location Chr07:52350768-52353276 (-)

Description Similar to At3g05520: F-actin-capping protein subunit alpha

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g05520`	F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028757 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007015 actin filament organization Biological Process

GO:0009617 response to bacterium Biological Process

GO:0030036 actin cytoskeleton organization Biological Process

GO:0051016 barbed-end actin filament capping Biological Process

GO:0051693 actin filament capping Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0008290 F-actin capping protein complex Cellular Component

GO:0030863 cortical cytoskeleton Cellular Component

GO:0030864 cortical actin cytoskeleton Cellular Component

GO:0051015 actin filament binding Molecular Function

KEGG gene cross-reference

ath:AT3G05520

ddi:DDB_G0272104

dnm:101438046

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.720

Rank 1 · TkA07G207910 · TK1151

Nucleus0.286

Rank 2 · TkA07G207910 · TK1151

Golgi apparatus0.128

Rank 3 · TkA07G207910 · TK1151

Cell membrane0.101

Rank 4 · TkA07G207910 · TK1151

Lysosome / Vacuole0.080

Rank 5 · TkA07G207910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01267F-actin_cap_A4-226 aa

PF01115F_actin_cap_B45-128 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G207910	`PF01267`	F-actin_cap_A	4	226	7.2e-64	216.5
TkA07G207910	`PF01115`	F_actin_cap_B	45	128	0.0027	18.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O82631`	Arabidopsis thaliana	sp\|O82631\|CAPZA_ARATH F-actin-capping protein subunit alpha	70.900%	Swiss-Prot	High

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